Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01599 ATGTTCGTGTCGTGTGGTTTGTTGGAATATGCGCGCCACATGTTTGACAAAATGCGTGTGAGGGACTTCAACTCTTGGGCAACCTTGTTCGTTGCGTACTATGATAATTCCGATTACGAGGAGGCTACAGCTGTTTTTGTCGACATGCTAGGCCAATTGGGTATGTTGCAATTTCCTCCGTGGATATGGGCTTGCCTTCTCAGGGCTTGTGCATGCACTGTGAATGTCCCTTTAGGAATGCAAGTTCATGGTTGGTTGTTGAAGCTGGGTACTTGTGATCACGTCCTTCTCAGCAGCTCCTTGATCAACTTCTACGGGAGGTTCACGTGCCTGGAAGATGCGAGCGTTGTCTTCAATGGGGTGTCGCGACATAACACGCTGACTTGGACGGCTAAAATCGTCAGCAGTTGCAGGGAAAGGCATTTCTCTGAGGTTTTTGGTGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTTACGTTTTCGAGTGTTCTCAAGGCATGTGGGAAGATGTTGAATCAGGAACGATGTGGTGAACAAGTTCATGCTGATGCTATCAAACTTGGGCTGGTCTCAGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTATTGAGAGATGCAAAACGGGTGTTTGAGATGAGCCGGGAGGAGAGAAAGGTTGATTGTTGGAATGCTATGCTTATGGGTTACATACAGAATGGTTTGTACATTGAAGCTGTTAAGTTTCTGTATCAGATGCAGGCAGCTGGAATGCAGCCCCGGGAATCTTTGCTTAAAAAATTAAGAATTGCTTGTGGAAGTATTACCTACTCAAACATGAATTAG 852 0.4613 MFVSCGLLEYARHMFDKMRVRDFNSWATLFVAYYDNSDYEEATAVFVDMLGQLGMLQFPPWIWACLLRACACTVNVPLGMQVHGWLLKLGTCDHVLLSSSLINFYGRFTCLEDASVVFNGVSRHNTLTWTAKIVSSCRERHFSEVFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLVSDHYVQCSLIAMYGRCGLLRDAKRVFEMSREERKVDCWNAMLMGYIQNGLYIEAVKFLYQMQAAGMQPRESLLKKLRIACGSITYSNMN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01599 283 NCBIfam pentatricopeptide repeat 231 262 IPR002885 -
Pumo8g01599 283 Gene3D Tetratricopeptide repeat domain 132 280 IPR011990 GO:0005515
Pumo8g01599 283 Gene3D Tetratricopeptide repeat domain 1 75 IPR011990 GO:0005515
Pumo8g01599 283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Pumo8g01599 283 Pfam PPR repeat 202 225 IPR002885 -
Pumo8g01599 283 Pfam PPR repeat 231 259 IPR002885 -
Pumo8g01599 283 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 180 282 - -
Pumo8g01599 283 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 133 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01599 Pumo-Chr8 51253559 51255220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01599 1 278 Glycoside Hydrolase AT3G49170 31.488 2.13e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01599 - - gmx:100778405 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01599 8 51253559 51255220 Pumo8g01599 8 51253559 51255220 ECH