Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01571 ATGGCGACTGAATCCGGCGTGAACGGTCCTTCCGTTCCTTTGTCCAATTCCGCGGAATCCTTCATCGGTTGCTTCATAAGCTTGATTTCCAAGTGCGAGATTCGCTACGAGGGCGTTCTCTATTTCCTTAACATTCAGGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAAAAAAGATGGTCCACAAGTTCCTCCAAGTGACAAAGTTTATGAATACATTCTTTTTCGAGGAAATGATATTAAGAATTTGCAGATCAAGTCACCCTCTACATCTTCCAAATCAGAAGAGCAGGTTTTTAGTGATCCAGCTATTATTCAGTCACAATATTCTTCTGGGTTACTAAGTTCTCCAGTGAGTGGGTTGCTAAGTTCTCCAGTGGCCTCAGTTGGTGGTAGAAGTTTGACAGAATCAATTCAAAGGCGAGATAGCCCTGCAATATCCAGCAAAGCCTTTCCTGCTGGGTTGCCTTCTCATCAGTCTGTAACTCAGCTGGGACCTTCAAATTCATCTGCTGCTACTCAAGTTGCTAGTCATCCATTGTTTTCTACAGCTATGTATTGGCAAGGACCCAGTGGGATATCTAGCAGTAGTTCTCATTCTCTGCTACAATCTAGTTCTCTTCACCCCCCATCTCTGCCAGCATCCTTAGCTGTGCAGAATCAGATGCAAAATGCAGAAACTCAGGTACCTATAAAAGGGGGATGGCTAGCTTTATCAGAGTATGGTCTACCTGTATCTTCTGCCATGACTTCTTCTCTTGTAAATATGACCCATTCACCTTCTTTTACTTCTTTAAAAAATTCTGATTCTCTTGATATTCCATCCCTTTTGTCTACTAAGACACCTGTGCCATATTCTGCATCCATGACTTTTGATGGATCAAACATGCCTTGGTTTTCTTCACCGCTCCAAGACATAAATTCTATTGAAGCTCAAATATCTGGAAACATTTGTCCAGACCCAACTGCCAATTCATCCTCGACATTCTGTCCATCATTCTGCTCCTTTATTTGTAGATTCTACTTCAGGTCCCTTGCCAACAGCACCGTCTTTGTTAAGCCCAGATCAATTTGCACATCCTAG 1104 0.4284 MATESGVNGPSVPLSNSAESFIGCFISLISKCEIRYEGVLYFLNIQDSTIGLKNVRSYGTEGRKKDGPQVPPSDKVYEYILFRGNDIKNLQIKSPSTSSKSEEQVFSDPAIIQSQYSSGLLSSPVSGLLSSPVASVGGRSLTESIQRRDSPAISSKAFPAGLPSHQSVTQLGPSNSSAATQVASHPLFSTAMYWQGPSGISSSSSHSLLQSSSLHPPSLPASLAVQNQMQNAETQVPIKGGWLALSEYGLPVSSAMTSSLVNMTHSPSFTSLKNSDSLDIPSLLSTKTPVPYSASMTFDGSNMPWFSSPLQDINSIEAQISGNICPDPTANSSSTFCPSFCSFICRFYFRSLANSTVFVKPRSICTS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01571 367 Pfam Scd6-like Sm domain 21 94 IPR025609 -
Pumo8g01571 367 ProSiteProfiles Sm domain profile. 13 96 IPR047575 GO:0003723
Pumo8g01571 367 SMART LSM14_2 15 116 IPR025609 -
Pumo8g01571 367 MobiDBLite consensus disorder prediction 140 177 - -
Pumo8g01571 367 Gene3D - 13 97 - -
Pumo8g01571 367 MobiDBLite consensus disorder prediction 160 177 - -
Pumo8g01571 367 PANTHER SCD6 PROTEIN-RELATED 16 324 - -
Pumo8g01571 367 CDD LSm14_N 18 92 IPR025609 -
Pumo8g01571 367 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01571 Pumo-Chr8 50941912 50945795 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01571 K18749 - gmx:102669894 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01571 8 50941912 50945795 Pumo8g01571 8 50941912 50945795 ECH