LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo8g01527	ATGGGTAATCCCCGGAAACCGAGTTCCGCCGACGAGCTTCACACGGCGGCTAGGTCCGGTGATCTTATCGCCGTTAACTCAATTTTGGCTTCAAATCCTTTGGCCGCTAATTCCCGAGATAAGCATTCCAGAACACCTCTACATTTAGCAGCATTTTCTGGGCAAACAGAGGTAGTCACTTATCTCTGCAAGCACAAGGCTGATGTTGGTGCTTCTGCAATGGATGACATGGCTGCAATACACTTTGCTTCACAGAAGGGACATTTAGAAGTTGTTCGTGCTCTACTTTCAGCTGGAGCCTCTCTCAAAGCCTCCACCCGCAAAGGCATGACTTCATTACATTATGCTGTTCAAGGTTCCCATCTGGAACTCGTCAAGTACTTGGCCAAGAAAGGGGCAAACCTTGGTGCTAAGACAAAGGCAGGAAAGACTCCTCTGGATCTTGCTACCAATGAAGAAATCCGCTCCTATCTGGAGGAATTTGAGAAGTCAGCAAAGAATGCAGAATTGGGAAAGAAAGATAAGGATAAAGCTGAAGAATCTGATCCAAAGACATCCGCATTGGGATCTGAAGGTGAGTTGAGTGCTGAACCTCCTGCAGCTGCTGCTGATGATGAAGAAAACAACGAGAGAGAGAAGAGGAAGGGTAATGAAGATGATGCAAGGGAAGAGTCATCACAACCAAAAAAGGCGAGAATTAAGTTAAGCCATCTCCAAAGTTCAGACGATACCCAAGAAGAAGAAAACCTGTAG	753	0.4622	MGNPRKPSSADELHTAARSGDLIAVNSILASNPLAANSRDKHSRTPLHLAAFSGQTEVVTYLCKHKADVGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKASTRKGMTSLHYAVQGSHLELVKYLAKKGANLGAKTKAGKTPLDLATNEEIRSYLEEFEKSAKNAELGKKDKDKAEESDPKTSALGSEGELSAEPPAAAADDEENNEREKRKGNEDDAREESSQPKKARIKLSHLQSSDDTQEEENL	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo8g01527	250	ProSiteProfiles	Ankyrin repeat region circular profile.	75	104	-	-
	Pumo8g01527	250	PRINTS	Ankyrin repeat signature	43	58	IPR002110	GO:0005515
	Pumo8g01527	250	PRINTS	Ankyrin repeat signature	91	105	IPR002110	GO:0005515
	Pumo8g01527	250	MobiDBLite	consensus disorder prediction	204	244	-	-
	Pumo8g01527	250	ProSiteProfiles	Ankyrin repeat region circular profile.	108	140	-	-
	Pumo8g01527	250	MobiDBLite	consensus disorder prediction	168	186	-	-
	Pumo8g01527	250	MobiDBLite	consensus disorder prediction	168	250	-	-
	Pumo8g01527	250	ProSiteProfiles	Ankyrin repeat profile.	42	74	IPR002110	GO:0005515
	Pumo8g01527	250	Gene3D	-	6	183	IPR036770	-
	Pumo8g01527	250	Pfam	Ankyrin repeats (3 copies)	13	71	IPR002110	GO:0005515
	Pumo8g01527	250	Pfam	Ankyrin repeats (3 copies)	80	159	IPR002110	GO:0005515
	Pumo8g01527	250	PANTHER	ANKYRIN REPEAT PROTEIN	5	182	-	-
	Pumo8g01527	250	ProSiteProfiles	Ankyrin repeat profile.	75	107	IPR002110	GO:0005515
	Pumo8g01527	250	ProSiteProfiles	Ankyrin repeat profile.	108	140	IPR002110	GO:0005515
	Pumo8g01527	250	SMART	ANK_2a	75	104	IPR002110	GO:0005515
	Pumo8g01527	250	SMART	ANK_2a	108	137	IPR002110	GO:0005515
	Pumo8g01527	250	SMART	ANK_2a	42	71	IPR002110	GO:0005515
	Pumo8g01527	250	SUPERFAMILY	Ankyrin repeat	13	156	IPR036770	-
	Pumo8g01527	250	ProSiteProfiles	Ankyrin repeat region circular profile.	42	69	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo8g01527	11	162	Miscellaneous Gene Families	AT2G31820	34.810	3.30e-15	72.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo8g01527	-		-	gmx:100812821	414.846

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo8g01527	8	49897941	49899938	Pumo8g01527	8	49897941	49899938	ECH