Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01390 ATGTCGTTAACATGCTTTCTTGGGTGTGGTTTGCTCCGCCGCCAAGTGCACTTCCAACGCCAATGCTTGTTCAGGTTCTATTCCTCTGCTTCTTCTGCATTGATGTTGGAAGACCACATGTTTGATGAAAGTCCAAAATCTTATGATACCAATTTTGTGATTAATAGGCCTTCACCCCATGGTTCCGCAACAAGGAGAGAGTTGTTTCCTTTAGTGGCTAGGGTGTTCAAATCACTGAGTTGGAGAGTGGCAAGAGAAATAAGGTTTGGGAGTTGGGTTGAGAGTCATGGGTTTTCTCATTCAATCAATTGCTTTAGGATTATTGTTCATGCGTTTGCTTTGGCAGGGATGCATTTGGAAGTGTTTGCTTTGCTTAGAGATATTGTTGGGTTCTGTAATGCGGCCAAGTATGATACCTTTGAATTGTTTTCAGCTTTGCTGGATTCACCCCAGCATGTGGAAAGATCCGGTGTTGTGTTTGATGTGCTCATAAAAGTGTTTGCATCGAACTCTATGCTGGAAAATGCTCTTGATGTGTTTGTGAATGCTAAGCATGTTGGGCTTGAGCCTGATATTAGGGCTTGCAATTTCTTGTTGAAATGCTTGGTTGAAGCGAATAGAGTGGAGTTTGTTAGATGGGTTTTTGAGGAATTGAAGGACCGCGGTCCGTTGCCAAATATCTACACCTATACAATCATGATGAATTTTTATTGTAGTGATGTTGGGTGTGATGCAGGTATGAGACGGGCTGATGTGATTCTAGGAAAAATATATCAGAGTGGGAAAAAGCCGACTGTTGTCACGTATAGTACTTATATTCATGGACTTTGTAAAGTTGGTAATGTTGAGGCTGCTCTGATGTTAATTCGCAACTTGCACTATAAAAACCAGCCTCTCAATAGCCATTCTTTTAATGCTGTAATTTATGGGTTTTGTAAAAGAGGTGAAGTGTTTGAGGCTTTGAAAGTTTTGGAAGAAATGAAGAGCTCTGGGATATTGCCAGATGTTTATAGCTACAGCATCTTAATTAATGCCTTCTGCGGGAATGGGGATGTAATGAAGTGTCTTGACTTGATGGAGGAAATGGAACACTCCCAGATAAAACCATCCATTGTTAGCTACACCTCCCTCATCCATGGTCTGTGCAAGAAGAATCTGTTACAAAATGCAGTGGATATATTCCGTAGTATTGGTGCTTCTAGTTGCAAATATGATCCGACTATTTATGAAACTTTAATTGATGGATTTTGCATGCAAGGTGATGTGGATTCAGCCATCGAGCTTTTGGAGGAGATGATCAGCAATAATTTGGTTCCTACTGTTTTTAGTTGCCGCAGTCTAATTAGGGGGTACTACAAACTGGGACTATTCGATCAGGCATTGGAAGTTTTTAATACCATGCTACGAGATGGTATTTGGCCAGATACCATTGCTTGCAATTATATTCTTGATGGATCTTGCAGGGCAGGGTACTTCAAAGAAGCCTTGACACTGTTGGAGGACTTCCAAGAACATGGATTTAACCTCAACCCACATTCATATAATGCAATCATCTACAAACTTTGTAAAGAAAGTTATCCAGAAAGAGCATTGGAGCTCCTGCCAAGAATGCTTAAAAGGAATGTACTTCCGACAGTTGTTAATTATAGTACTCTTATATCTGGCTTTGCCAAACAGTCAAATTTAAAAAGGGCTGTGAAGTTATTCTCGAGAATGGTAAAAGTGGGGATCACTTTCAACACTGCCACATATACAATTCTTATGAGCATATTTAGCCATAGTCGCAAAATGCATGAAGCATATGGCATTTTTAAGGAAATGAAAGAAAGGGGTTTGCGTCTAGATCAGATTTCATATACAACTTTAATAGCTGGCTTTTGTAATAACAGAGAAATGAAAAAGGCCTGGGCATTATTTGAAGAAATGTTGAGGGAAGGCTATTCGCCAAATGTAATTACTTATACTTGTATGATTGATGGATTTTGCAAGTCAAACCAGATAGATTTGGCCTCCTGGCTGTTTGATAAAATGAACAGAGATTCAGTTATTCCTGATGTTGTGACTTACACTGTCCTCATTGCTTGGTACCATAAGCATGGGCACATCGATCAGGCATATAAGCTATATGATGTAATGAAGGAAAAGGGTGTTTTTCCAGATGATATAACCCATAATGTTCTAGGTCTGAAAGCTGGTGCAGTTCAAGAAGGTTAG 2214 0.3975 MSLTCFLGCGLLRRQVHFQRQCLFRFYSSASSALMLEDHMFDESPKSYDTNFVINRPSPHGSATRRELFPLVARVFKSLSWRVAREIRFGSWVESHGFSHSINCFRIIVHAFALAGMHLEVFALLRDIVGFCNAAKYDTFELFSALLDSPQHVERSGVVFDVLIKVFASNSMLENALDVFVNAKHVGLEPDIRACNFLLKCLVEANRVEFVRWVFEELKDRGPLPNIYTYTIMMNFYCSDVGCDAGMRRADVILGKIYQSGKKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYKNQPLNSHSFNAVIYGFCKRGEVFEALKVLEEMKSSGILPDVYSYSILINAFCGNGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNLLQNAVDIFRSIGASSCKYDPTIYETLIDGFCMQGDVDSAIELLEEMISNNLVPTVFSCRSLIRGYYKLGLFDQALEVFNTMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKESYPERALELLPRMLKRNVLPTVVNYSTLISGFAKQSNLKRAVKLFSRMVKVGITFNTATYTILMSIFSHSRKMHEAYGIFKEMKERGLRLDQISYTTLIAGFCNNREMKKAWALFEEMLREGYSPNVITYTCMIDGFCKSNQIDLASWLFDKMNRDSVIPDVVTYTVLIAWYHKHGHIDQAYKLYDVMKEKGVFPDDITHNVLGLKAGAVQEG 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Pumo8g01390 737 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 73 450 - -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat family 300 347 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat family 615 663 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat family 684 727 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat family 474 523 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat family 190 239 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat family 544 589 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 615 649 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Pumo8g01390 737 Gene3D Tetratricopeptide repeat domain 364 434 IPR011990 GO:0005515
Pumo8g01390 737 Gene3D Tetratricopeptide repeat domain 435 505 IPR011990 GO:0005515
Pumo8g01390 737 Gene3D Tetratricopeptide repeat domain 648 715 IPR011990 GO:0005515
Pumo8g01390 737 Pfam PPR repeat 401 432 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat 261 289 IPR002885 -
Pumo8g01390 737 Pfam PPR repeat 367 395 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Pumo8g01390 737 Gene3D Tetratricopeptide repeat domain 82 243 IPR011990 GO:0005515
Pumo8g01390 737 Gene3D Tetratricopeptide repeat domain 518 647 IPR011990 GO:0005515
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 685 719 IPR002885 -
Pumo8g01390 737 SUPERFAMILY TPR-like 403 654 IPR011990 GO:0005515
Pumo8g01390 737 Gene3D Tetratricopeptide repeat domain 244 363 IPR011990 GO:0005515
Pumo8g01390 737 Pfam PPR repeat 443 472 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 478 510 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 687 720 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 512 545 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 337 370 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 583 615 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 267 290 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 617 651 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 408 441 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 303 336 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 443 475 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 549 580 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 372 405 IPR002885 -
Pumo8g01390 737 NCBIfam pentatricopeptide repeat 652 686 IPR002885 -
Pumo8g01390 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 650 684 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01390 208 727 Glycosyltransferase AT1G05670 29.446 2.82e-71 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01390 - - gmx:100818511 1362.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01390 8 46482709 46484922 Pumo8g01390 8 46482709 46484922 ECH