Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01368 ATGTGTTTCTCACTCTCTTCACCCGCAGAGGAGCCAATGGATGCTCCTCCCGCACCGTTTCTGTTTTCTGAAACCCTAGGTGCCTCCGAATCGGTCGCCGATTTCGGCGGTTATTCCGTTCAGTCCCCGGCCGGCGGCGGCTCTACCTTTCCGGAGGACACGCCGGAAGAGGATACCGGCACGTCTTCCTCGTTCCGGCAGCTCAACGACGACGACTCTTCTTCGCCGTGGTTGCCGGCGTTGGCTTCGAATTCGCGTGTCTCCGCGCCGGCGCCGGAATCGTGGATTGCTCCCCAAGGAAACTGGCAATTATCTGAAAATGACGGTTCAGAGGATACAGAGTCCGCCTCTGAAGTTGTGCCTTCTAAAATGGGAGCAGGGCTTTTGAATCTTGGCAATACGTGCTTTCTTAATGCTATTCTGCAATGCTTTACGCACACGGTGCCTCTGGTGCAGGGCCTTCGTTCGTGCTCTCATCCTATCCCTTGTGCTAGTCATAGGGATGGGTTCTGTGTTATTTGTGCTCTACGTATACAGGTTGAAACTTCCTTAGTGGCTTCAGGACGGACTCTTTCACCCTTGAAATTTGTGAAGAATTTGAACTATTTTTCTTCTGAATTTAGAAGATACCAGCAGGAGGATGCCCATGAATTTATGCAGTGTGCCTTAGATAAACTGGAAAGATGTTTCCTAGATCTGAGGAAGAGTAATTTAAATTTTGAAGATGACAATCTTGTAGAGAAAGTATTTGGAGGTCGTCTCATTAGCAAACTCCAATGTTGTAGTTGCGATCACTCTTCCGACACTTTTGAGCCACTAATTGATATGAGTTTAGAGATAGAAAATGTAGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAACATTGATGAAAACTTTAGATGTGATAGCTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATCAGACACCATCAGTTGCAGCATTTCATTTAAAGAGATTTAAGACAGATGGGATCCTTGTTGAAAAGATTGATAAGCATATTGATTTCCCGTTGGAGTTAGACTTACAGCCTTACACCATTTCTAATCAAAATGATGTACCATTGAAATATGATTTATATGCAATTGTTGTGCACACTGGAATTTCGGCTACTTCAGGGCATTACTTCTGCTTTGTTCGCTCTGCTCCAGACACATGGCATAAGTTGGATGATTCAATGGTTACTGAGGTCTCAGGGGACCATGTACTGTCACAGGAAGCATACATATTGTTTTATGCACAACAGGGTACTCCATGGTTTTCGAGTATTATGGAATCCCAAACACAATGCTTGGATCCGAATATTATTATGAGTACATCTCCCAAGTCTGTTTTAGATATTGGTGACAGCATGGCTAAATCAAATCCTATTTTAATTCCAAATATTGAAAGAGAGGGGGCTGGTGAATCCAAAGAATGTTCTGAGCCTCAGTTTGATTATTATTGTCAAGAAGAACATGAGTTTCTTGAAATAGATGATACTAAAGATGCTACTCATGGTAGTGAACAATTTATCTCTATCCCATCAGAACTCCCTGGTGAAGAATTTCTCTCTGGGTCAAATCAGGAAAGTGTTGATTTGAATAGCTCTAAAGATGTTGATGCCCAAAAGCTGTTTAGGAACAGGGCCACCTTGGATGATACTCATGATAGTGTCATGATGGATGGAAATTCATATATTGAGAAAGGTAGTCTTGATAATAACGATAACTGTCAGGAAGTTGTTGATTTTAGAGAGAATGCTGGTTTCCATTCTTTAACTCCGCCTAACTCGCCTCCTGATGATGCTTCAGATAAGTTTCATATCTCACGTGATAATTTGAAGAGGGAGAATCATCGAAGCTGTAAAAAATCATCAAATAAGTTTACTGGGGATTCTGAAGAGAGACGAGAAGCTGTGAAATATCTTAACAAGAGTCAGAATCGTTCAAGGAGAGGGGTACTTTTGAAATTTGTTACTCCGGATAAAGTTTTGGACAAGAAGAGAAAAAAGATGGATTCATCGCAGTGTAAGAAAAGCACCACTCTTGATGCTTGCAAAAAATCAAACCACACATCTGTCAACCGTCCTGTGGCAGCTGGAATTTCACAGTGA 2136 0.4242 MCFSLSSPAEEPMDAPPAPFLFSETLGASESVADFGGYSVQSPAGGGSTFPEDTPEEDTGTSSSFRQLNDDDSSSPWLPALASNSRVSAPAPESWIAPQGNWQLSENDGSEDTESASEVVPSKMGAGLLNLGNTCFLNAILQCFTHTVPLVQGLRSCSHPIPCASHRDGFCVICALRIQVETSLVASGRTLSPLKFVKNLNYFSSEFRRYQQEDAHEFMQCALDKLERCFLDLRKSNLNFEDDNLVEKVFGGRLISKLQCCSCDHSSDTFEPLIDMSLEIENVDSLPSALESFTKVENIDENFRCDSCKEEVSMEKQLMLDQTPSVAAFHLKRFKTDGILVEKIDKHIDFPLELDLQPYTISNQNDVPLKYDLYAIVVHTGISATSGHYFCFVRSAPDTWHKLDDSMVTEVSGDHVLSQEAYILFYAQQGTPWFSSIMESQTQCLDPNIIMSTSPKSVLDIGDSMAKSNPILIPNIEREGAGESKECSEPQFDYYCQEEHEFLEIDDTKDATHGSEQFISIPSELPGEEFLSGSNQESVDLNSSKDVDAQKLFRNRATLDDTHDSVMMDGNSYIEKGSLDNNDNCQEVVDFRENAGFHSLTPPNSPPDDASDKFHISRDNLKRENHRSCKKSSNKFTGDSEERREAVKYLNKSQNRSRRGVLLKFVTPDKVLDKKRKKMDSSQCKKSTTLDACKKSNHTSVNRPVAAGISQ 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01368 711 MobiDBLite consensus disorder prediction 619 642 - -
Pumo8g01368 711 FunFam Ubiquitin carboxyl-terminal hydrolase 20 122 432 - -
Pumo8g01368 711 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 371 389 IPR018200 GO:0004843|GO:0006511
Pumo8g01368 711 MobiDBLite consensus disorder prediction 99 119 - -
Pumo8g01368 711 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 127 142 IPR018200 GO:0004843|GO:0006511
Pumo8g01368 711 MobiDBLite consensus disorder prediction 1 21 - -
Pumo8g01368 711 MobiDBLite consensus disorder prediction 33 80 - -
Pumo8g01368 711 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 126 429 IPR028889 -
Pumo8g01368 711 MobiDBLite consensus disorder prediction 42 80 - -
Pumo8g01368 711 SUPERFAMILY Cysteine proteinases 125 428 IPR038765 -
Pumo8g01368 711 MobiDBLite consensus disorder prediction 99 117 - -
Pumo8g01368 711 Gene3D Cysteine proteinases 122 430 - -
Pumo8g01368 711 Pfam Ubiquitin carboxyl-terminal hydrolase 127 426 IPR001394 GO:0004843|GO:0016579
Pumo8g01368 711 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 75 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01368 Pumo-Chr8 46190380 46194524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01368 121 443 Miscellaneous Gene Families AT4G31670 34.036 4.58e-52 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01368 K11855 - gmx:100808015 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01368 8 46190380 46194524 Pumo8g01368 8 46190380 46194524 ECH