Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01242 ATGAAGAGGAACAGAAGTTTTTCCTTGCTCTTTTTCCTGTCCTTGTTGGTGATTGTCTTTGTCACCTTCTCTATAGTTTCTGTAGAAGCAAGGAAGACTAACATCAAGAAAAAACTTCACAAAAGTCACAAAGGTGGCCACAGTAGCAATGGCCACACTCGAGGGTCACATTCTCCATGTCCAGTGCCAACCCCTCAAGGGAGCACCTTTGATGTTTTGTCTTTTGGCGCCAAGGGAAATGGAGTTTCTGATGATTCAGAGGCACTTCTTGCTGCATGGAAAGGTGCATGTAAAGTTGCCGGTGCTACAGTTAAAATTCCAGCACAATTCAAGTTCCTCATCAAACCTGTTACTTTACAAGGCCCTTGTATGCCTGACCTTACTCTTCAGATAGATGGAACTCTATTGGCACCTCCTGAAGCATCTTCCTGGCCAAAATCTAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTGCAGAACTTCACCATCAAAGGCTCTGGCACTGTTGATGGCCAAGGCTATAACTGGTGGAGCTCCTCAGAATTTTATGACATACAGGTAAAATTATCAGGAAATAAACAAATTCAAGTATATGCTATAAGATTCTACTCCAGCAACTTTGTAACAGTTCGTGACATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGGATTGAAGTTGACAACATTACAATATCCTCCCCGGAGAATAGCCCCAACACTGATGGCATTCACTTACAAAACACACAGGACGTAGAAATTCAACGTTCTATCATTGCAACAGGAGATGACTGTGTATCCATTCAAACCGGTTGCTCTAATGTTCATGTCCACCATATTAATTGTGGCCCTGGACATGGTATAAGTTTGGGAGGATTAGGAAAAGACAAGAGTGTGGCATGTGTGTCTGACATCACTGTTGAGGATATCTCTATGAAAAACACACTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCATTGGTATGGTTAAAAATGTGACATTTTCCAGAATTCAAGTCTATGATGTTATGTTTCCAATAATGATAGACCAATACTATTGTGACAAGCAAATCTGCAAGAACCATACAAGCACTGTGGTGATTTCTGGGGTTAAGTTTAATCAAATACATGGAACTTATGGTATGCAGCCTGTCCATCTAGCTTGCAGCAATTCCATACCATGCACAGATGTTGATTTAACTGATATTCAACTGAGTCCCTCCCCTAAATATAGAGGTTTGCAACAAGCTGTGTGCTGGAACTCTTATGGAAAATCGCAAGGCCCCTTCCTACCTTCAACCATTGATTATTGCTTGAGAAGTGGTGGTGGACTAATCAAGAGGATAGCAAGGTCACATGATAGAGTGTGTTACTAG 1398 0.4142 MKRNRSFSLLFFLSLLVIVFVTFSIVSVEARKTNIKKKLHKSHKGGHSSNGHTRGSHSPCPVPTPQGSTFDVLSFGAKGNGVSDDSEALLAAWKGACKVAGATVKIPAQFKFLIKPVTLQGPCMPDLTLQIDGTLLAPPEASSWPKSSLFQWINFKWVQNFTIKGSGTVDGQGYNWWSSSEFYDIQVKLSGNKQIQVYAIRFYSSNFVTVRDIRIINSPLCHLKFDNSKGIEVDNITISSPENSPNTDGIHLQNTQDVEIQRSIIATGDDCVSIQTGCSNVHVHHINCGPGHGISLGGLGKDKSVACVSDITVEDISMKNTLYGARIKTWQGGIGMVKNVTFSRIQVYDVMFPIMIDQYYCDKQICKNHTSTVVISGVKFNQIHGTYGMQPVHLACSNSIPCTDVDLTDIQLSPSPKYRGLQQAVCWNSYGKSQGPFLPSTIDYCLRSGGGLIKRIARSHDRVCY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01242 465 FunFam polygalacturonase At1g48100 58 448 - -
Pumo8g01242 465 Pfam Glycosyl hydrolases family 28 102 419 IPR000743 GO:0004650|GO:0005975
Pumo8g01242 465 Gene3D - 62 444 IPR012334 -
Pumo8g01242 465 PANTHER - 69 432 - -
Pumo8g01242 465 SUPERFAMILY Pectin lyase-like 62 441 IPR011050 -
Pumo8g01242 465 MobiDBLite consensus disorder prediction 37 61 - -
Pumo8g01242 465 SMART pbh1 228 254 IPR006626 -
Pumo8g01242 465 SMART pbh1 337 358 IPR006626 -
Pumo8g01242 465 SMART pbh1 278 298 IPR006626 -
Pumo8g01242 465 SMART pbh1 255 276 IPR006626 -
Pumo8g01242 465 SMART pbh1 308 329 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01242 Pumo-Chr8 44166794 44169455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01242 1 464 Glycoside Hydrolase AT3G26610 61.653 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01242 K01213 - gmx:100803027 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01242 8 44166794 44169455 Pumo8g01242 8 44166794 44169455 ECH