Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01229 ATGTTGGGAGGCAACAACGGAAGTCGCTTGCTTCCTGTTTTCTTGGACGAGACTCAATTTCGGCATCAAAATAATGCGTCAAATCAATTGCAGTTGTTTGGAAATTTACAAGCTGGATGTAGTGTTGATCCAGTTAATTACTTTGGAAACGAGCATATCAGCTCCATGATTCAGCCTAATAAACGAAGCAAGGAAATGGAAGATATATCAAAACAAAGGCTTCAGATTTCCTTAAATTACAATGTCCATCAAGATGATGCTGATCGATTAGCAAGTATTCCAAACTCCAACCCTGTGTCCACAGGATTGAGGCTTTCATATGATGATGATGAGCGTAACTCATCTGTTACCTCTGCCAGTGGCAGCATGACTGCTGCACCATCTATCATATTGTCTCTTGGTGACAATATCAGAACTGAGCTTGATAGGCAGCAGGAAGAGTTGGACCACTATATTAAACTTCAGAAGGAACAACTGTCAAAGGGAGTGAGAGACATGAAGCAAAAGCACATGGCTGCTCTCCTTACCTCCATTGAGAAAGGTATTAGCGCGAAGCTAAAGGAAAAAGAGGTGGAGATAGAAAACATGAACCGAAAAAATAGGGAGCTGGCAGAAAGAATAAAGCAGGTGGCTATTGAAGCACAAAGCTGGCATTACAGAGCAAAGTATAATGAGTCAGTTGTCAATACATTAAGGAACAACCTTCAGCAGGCAATCTCACAAGGAGCTGAACAAGGGAAGGAAGGGTTTGGAGATAGTGAAGTTGATGATGATGCCTCATATATAGATCCTAATAACTTCCTGAACATTCCGGGTGCACCTATAAACTCTACTCACAAGAGCTTCCAAGATGTGGAGAATCTGACTTGCAGAGCATGCAAGGCAAAGACAGTTTCCATGTTGTTGATGCCTTGCAGGCACCTGTGCTTGTGTAAGGACTGTGAGGGATTTATCAATGTTTGTCCTGTATGCCAATTGATAAAAACTGCAAGTGTTGAGGTGTATCTGTCTTAA 1014 0.4181 MLGGNNGSRLLPVFLDETQFRHQNNASNQLQLFGNLQAGCSVDPVNYFGNEHISSMIQPNKRSKEMEDISKQRLQISLNYNVHQDDADRLASIPNSNPVSTGLRLSYDDDERNSSVTSASGSMTAAPSIILSLGDNIRTELDRQQEELDHYIKLQKEQLSKGVRDMKQKHMAALLTSIEKGISAKLKEKEVEIENMNRKNRELAERIKQVAIEAQSWHYRAKYNESVVNTLRNNLQQAISQGAEQGKEGFGDSEVDDDASYIDPNNFLNIPGAPINSTHKSFQDVENLTCRACKAKTVSMLLMPCRHLCLCKDCEGFINVCPVCQLIKTASVEVYLS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01229 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 337 IPR013083 -
Pumo8g01229 337 MobiDBLite consensus disorder prediction 89 121 - -
Pumo8g01229 337 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 271 336 - -
Pumo8g01229 337 CDD mRING-HC-C3HC5_CGRF1-like 289 324 - -
Pumo8g01229 337 ProSiteProfiles Zinc finger RING-type profile. 290 325 IPR001841 -
Pumo8g01229 337 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 53 334 IPR017066 -
Pumo8g01229 337 Coils Coil 179 213 - -
Pumo8g01229 337 Pfam Zinc finger, C3HC4 type (RING finger) 287 325 - -
Pumo8g01229 337 PIRSF SBP1_RNase_bind 1 337 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01229 Pumo-Chr8 43876577 43881245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01229 284 325 Miscellaneous Gene Families AT4G39050 38.095 3.62e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01229 K19042 - gmx:100791550 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01229 8 43876577 43881245 Pumo8g01229 8 43876577 43881245 ECH