Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01206 ATGGCTGCGGAAAACGTAGTTGAGTTCACAGACTTACCCGTCAAGAGACCCAGAGAAGAAGAAGAAGAGGGAACAAATGGCGTCTCCGACGCCGTTTCGACGCTTCCCAATGACCCTCAATACCCTGGCATCTCAGCGGTTATTCCCGGTTGGTTCTCCGAAATCAGCCCAATGTGGCCCGGGGAGGCGCACTCCTTGAAAGTGGAAAAGATTCTGTTTCAAGGGAAGTCTGACTACCAGAATGTCATGGTCTTCCAGTCATCAACATACGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTAGCACGCCATGCCTCAGTAGAGAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGATGTCTCCAAACAATATTTCCCCGATATAGCAGTAGGTTTTGACGACCCACGTGTGACACTTACTGTTGGTGATGGAGTTGCATTTTTGAAGGATGTTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAAGAGCTGTTTGAAAAGCCCTTTTTCGCATCCGTTGCGAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTGGCTAATTGTCGCCATATATTCAAAGGTTCTGTCAACTATGCATGGACCACGGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGTCCTCCTGTTGACTTCAAGCATCCAGGGAATCCTATAGATGAGAATGATAGTCAGCAGTCAACAAGACCATTGAAATTTTACAACTCTGAGATTCATACAGCGGCTTTCTGTTTGCCATCTTTTGCTAAGAGGAAGATTGGTTCTAAAGCAAATTGA 1020 0.4588 MAAENVVEFTDLPVKRPREEEEEGTNGVSDAVSTLPNDPQYPGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASVEKIDICEIDKMVVDVSKQYFPDIAVGFDDPRVTLTVGDGVAFLKDVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVARALRPGGVVCTQAESIWLHMHIIEDIVANCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPGNPIDENDSQQSTRPLKFYNSEIHTAAFCLPSFAKRKIGSKAN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01206 339 Gene3D Vaccinia Virus protein VP39 102 339 IPR029063 -
Pumo8g01206 339 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Pumo8g01206 339 FunFam Spermidine synthase 1 102 339 - -
Pumo8g01206 339 Gene3D Spermidine synthase, tetramerisation domain 43 101 IPR037163 -
Pumo8g01206 339 Pfam Spermine/spermidine synthase domain 107 294 - -
Pumo8g01206 339 NCBIfam spermidine synthase 51 329 IPR001045 GO:0003824
Pumo8g01206 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 334 IPR029063 -
Pumo8g01206 339 Hamap Polyamine aminopropyltransferase [speE]. 50 335 IPR001045 GO:0003824
Pumo8g01206 339 FunFam Spermidine synthase 1 42 101 - -
Pumo8g01206 339 MobiDBLite consensus disorder prediction 11 25 - -
Pumo8g01206 339 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 49 286 IPR030374 -
Pumo8g01206 339 MobiDBLite consensus disorder prediction 1 36 - -
Pumo8g01206 339 CDD AdoMet_MTases 127 238 - -
Pumo8g01206 339 PANTHER SPERMIDINE/SPERMINE SYNTHASE 44 336 IPR001045 GO:0003824
Pumo8g01206 339 Pfam Spermidine synthase tetramerisation domain 50 104 IPR035246 -
Pumo8g01206 339 PIRSF Spermidine_synth 40 339 IPR030668 GO:0006595
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01206 Pumo-Chr8 43566175 43570083 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01206 K00797 - gmx:100790506 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01206 8 43566175 43570083 Pumo8g01206 8 43566175 43570083 ECH