Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01172 ATGATCACCTTCATTCCGAATCATCCACCTCATCCTCCCTCTTCTCACAACCGAGCCTCCCTTCATGTCCCTTCCCTCACCCCACAACAACCCCACAACCACGAAGAACAACACCAAACCACCCACCACAATCTCATCACCACCGTCAAGGGCCACACCTCCTTCATCTTCGCCCTCGCCCTCCACGGCAAGTCCCTCTACAGCGCCTCCTCCAGCGGCGAAATAAGAGCATGCAGCAGAGATCCCACATCGACTAATGATATAATCAAATCAAAGTATATAAATGGAGAACAATCCTCATCTTACGACACAAACACCAACACCAACGCTGTTGTCGCAACCAGCAACGCGCCCGTCAAGTCCCACATCGTTTCCCACGACAAGCTATTCACCGCGCACCAAGACCACAAAATCCGTGTCTGGAAAACCGACCAACCCGGTAACCCGAACTACAAATGCGTCGCCACGCTTCCCACGTTCCACGACCGGTTCTCCAAGCTCTTCTCCTCCAAGAACTACGTCGAGATTCGGCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACACTGTCTCCGCCCTCGCGCTTTCCCAAGACGGGTCCCTCCTCTACTCTGCCTCGTGGGACAGAACATTCAAAATCTGGCGAACCTCGGATTTCAAATGTCTGGAGTCAGTTAAAAACGCGCACGAGGACGCAATTAATTCCTTGGTTTTGTCGAATAACGGTATTGTCTACACAGGTTCCGCGGACACTAAGATAAAGATGTGGAAGAAGCTCGAGGGAGAGAAAAAGCATTCTCTATTAGGAACCTTGGAGAAGCACAAATCTGCAGTGAATGCTCTTGCTCTTAACTCCGATGGGTCAGTGTTATATTCAGGTGCGTGTGACAGGTCAATTTTGGTGTGGCAGAGTGATGAAGATAAAAACAATAACATGGTGGTGGTGGGTGCTCTGAGGGGGCACACGAAAGCTATACTCTGTTTGGTGGTGGCGGCGGATTTGGTGTGTAGTGGATCTGCGGATAACAGTGTGAGGATATGGAGGAGAGGGGTTGAGAAAAGTTATTCGTGTTTGGCGGTGCTGGAAGGTCATCGACGACCCGTGAAGTGTTTGGCTATGGCTGTTGACTCCAATAGTGGTGGTCCTGATGAGGATGAAAGTAGGTCTTATCTGGTTTACAGTGCAGGTTTGGACTGTGACATTAAAGTGTGGCAAATACGCGTTCCTTTGCTGTCATTGTGA 1245 0.5052 MITFIPNHPPHPPSSHNRASLHVPSLTPQQPHNHEEQHQTTHHNLITTVKGHTSFIFALALHGKSLYSASSSGEIRACSRDPTSTNDIIKSKYINGEQSSSYDTNTNTNAVVATSNAPVKSHIVSHDKLFTAHQDHKIRVWKTDQPGNPNYKCVATLPTFHDRFSKLFSSKNYVEIRRHKKRTWVHHVDTVSALALSQDGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLVLSNNGIVYTGSADTKIKMWKKLEGEKKHSLLGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWQSDEDKNNNMVVVGALRGHTKAILCLVVAADLVCSGSADNSVRIWRRGVEKSYSCLAVLEGHRRPVKCLAMAVDSNSGGPDEDESRSYLVYSAGLDCDIKVWQIRVPLLSL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01172 414 Gene3D - 311 412 IPR015943 GO:0005515
Pumo8g01172 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Pumo8g01172 414 Gene3D - 34 150 IPR015943 GO:0005515
Pumo8g01172 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Pumo8g01172 414 MobiDBLite consensus disorder prediction 1 41 - -
Pumo8g01172 414 MobiDBLite consensus disorder prediction 18 34 - -
Pumo8g01172 414 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Pumo8g01172 414 Pfam WD domain, G-beta repeat 182 215 IPR001680 GO:0005515
Pumo8g01172 414 Pfam WD domain, G-beta repeat 357 405 IPR001680 GO:0005515
Pumo8g01172 414 Pfam WD domain, G-beta repeat 221 258 IPR001680 GO:0005515
Pumo8g01172 414 Pfam WD domain, G-beta repeat 317 348 IPR001680 GO:0005515
Pumo8g01172 414 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 408 IPR045182 -
Pumo8g01172 414 SUPERFAMILY WD40 repeat-like 42 407 IPR036322 GO:0005515
Pumo8g01172 414 CDD WD40 45 406 - -
Pumo8g01172 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Pumo8g01172 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 267 IPR001680 GO:0005515
Pumo8g01172 414 SMART WD40_4 42 79 IPR001680 GO:0005515
Pumo8g01172 414 SMART WD40_4 177 216 IPR001680 GO:0005515
Pumo8g01172 414 SMART WD40_4 312 349 IPR001680 GO:0005515
Pumo8g01172 414 SMART WD40_4 108 142 IPR001680 GO:0005515
Pumo8g01172 414 SMART WD40_4 355 406 IPR001680 GO:0005515
Pumo8g01172 414 SMART WD40_4 265 304 IPR001680 GO:0005515
Pumo8g01172 414 SMART WD40_4 219 258 IPR001680 GO:0005515
Pumo8g01172 414 FunFam BnaA09g28200D protein 174 262 - -
Pumo8g01172 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 348 IPR001680 GO:0005515
Pumo8g01172 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Pumo8g01172 414 Gene3D - 158 310 IPR015943 GO:0005515
Pumo8g01172 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01172 Pumo-Chr8 42659523 42661328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01172 123 363 Acyl Lipid Metabolism Gene Families AT3G18860 25.573 8.95e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01172 - - gmx:100778775 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01172 8 42659523 42661328 Pumo8g01172 8 42659523 42661328 ECH