Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01157 ATGAAGCCATACCACCTTTCCACATTGGTATTGCTCCTTCTCCTGGTCGACACCTCACTTTCGATTCCTAACCCAACTCAGTTCGAGTCCCTAACGCATTTTGTGAGACGAATTCCAAAAAAAGCTGTGCTGAAAGGCCTGGAATTCTCTAAAGAAATTCTGGAATTACTTTTGGATAAGTTTGGGAAACGCTTTCCTCCCCCGCCGCCACACATTCCAAGTACAGTACTGAAAATGGAAAGTTTGGCCCCATCCCCGTCGCCAGACAGTCCACAAAGGAAAATCAAAGGTCTGGGTTTGCTTAAACAGTACTTTTATGAATTCGGCTACTACCCAAACACTGGGTCAGGGAATTTCACAGATTACTTGGATGACAATGTGAAATTATCCTTTAAGAACTATATGGAGTATTTTAATCTCTCAAGTAAGCCACTCCACGCTACTGCTGAGCATATCTTAATGCAACGATGTGGCGTCCCTGATGTGAATTACGATTTCGGCTTTTACAACAACAGTAATCTGTCGTGGCCAAAAGGGAGGTTCCCTGGCAGAAAGAAAAACCTCACGTACAGTTTTGAGCCGGAGAGCCAAATCCCACAAAACATAACCAATGTGTTCAGGCGAGCTTTCCAGCGGTGGTCGCAGAGCATAGCGGGGTTGAATCTTAGTCTCACGGAGGCAACATCGCCTGACGAGGCTGCAGACATTATGGTTGGGTTCTACCAAGTAAATCGCACCTTCGAGGACCTGGTGGTGGCCGACACTGTTATGCAATTAAACGCGACTGGTCATAACAACAGCGTTGTTGTTGGGAAGGTTCGCCTAGACATTATCGAGTCGTGGACGCTGCCCGGTGAAGAGGGTGTTGACTTGGAGACGGTGGCGATGCACCAGATAGGTCATATTCTGGGACTGGACCACTCCAACGACGAGAAAGCGGTTATGTACCCTTCCATATTGCCCTCACGGCCAAGGAAGGTGAAGCTCGCACTCGATGATGTTCAGAAGATGCAACAACTCTATGCCACTGCTAGTGGTGACGCTGGTGACGCTGGCCGTGTTGTCACCTTCCCATTTGCCATGTTGGTCCATTGTCTTGCTTTTATGATTTTGGTCTTCTAG 1122 0.4768 MKPYHLSTLVLLLLLVDTSLSIPNPTQFESLTHFVRRIPKKAVLKGLEFSKEILELLLDKFGKRFPPPPPHIPSTVLKMESLAPSPSPDSPQRKIKGLGLLKQYFYEFGYYPNTGSGNFTDYLDDNVKLSFKNYMEYFNLSSKPLHATAEHILMQRCGVPDVNYDFGFYNNSNLSWPKGRFPGRKKNLTYSFEPESQIPQNITNVFRRAFQRWSQSIAGLNLSLTEATSPDEAADIMVGFYQVNRTFEDLVVADTVMQLNATGHNNSVVVGKVRLDIIESWTLPGEEGVDLETVAMHQIGHILGLDHSNDEKAVMYPSILPSRPRKVKLALDDVQKMQQLYATASGDAGDAGRVVTFPFAMLVHCLAFMILVF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01157 373 Gene3D Collagenase (Catalytic Domain) 90 346 IPR024079 GO:0008237
Pumo8g01157 373 PRINTS Matrixin signature 329 342 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pumo8g01157 373 PRINTS Matrixin signature 294 319 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pumo8g01157 373 PRINTS Matrixin signature 152 165 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pumo8g01157 373 Pfam Matrixin 184 342 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Pumo8g01157 373 PANTHER MATRIX METALLOPROTEINASE 81 342 - -
Pumo8g01157 373 SMART col_5 177 343 IPR006026 GO:0006508|GO:0008237|GO:0008270
Pumo8g01157 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 157 341 - -
Pumo8g01157 373 SUPERFAMILY PGBD-like 101 162 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01157 Pumo-Chr8 41770670 41771791 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01157 - - gmx:100801104 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01157 8 41770670 41771791 Pumo8g01157 8 41770670 41771791 ECH