Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01148 ATGAGAACCCATTTTCACTCTCTTCCATTACTTTTTTTGTTCACCCTATCCCTTCTATTGGGCCAAACCAGACCCGACCCTGACCCACTTCAAGATTATTGCGTTGCAGATAACAAAAGTGAATTTTTCATTAATGGGGTGCCTTGCATTAACCCAGAAAAAGTTTCCTCATCTCATTTTGTCACATCTGCTTTATCCAAAGCTGGCAACACTACCCAATTTGGCTTCAGTGTCACAGCCACCAGCACTGCTAATCTTCCTGGGCTTAACACCTTGGGCCTGGTATTGGTCCGGGTCGATATAGCGGGCAATGGGATCGTGCCACCTCACGCGCATCCACGGGCCTCGGAAGTGACCACTTGCCTTAATGGCCGGCTTCTTGTGGGCTTTGTTGACACAAATAACCGTGTCTTTACCCAGAACTTGAGTCCTGGTGAGTCATTTGTGTTCCCTAAGGGCCTGGTCCATTTCTTGTACAACCGTGACTCAAGGGAACCAGCACTAGCCATATCTGGTCTCAATAGCCAGAACCCAGGTTCACAAATTGCATCAATTGCAACATTTGCTAGCAAGCCTCCTATTCCTGATGAAATTCTTAAGAAGGCTTTCCAAATTTCCCAAAGAGAAGTGGAAACTATTCGTAGAAACCTTGGAGGATGA 660 0.4636 MRTHFHSLPLLFLFTLSLLLGQTRPDPDPLQDYCVADNKSEFFINGVPCINPEKVSSSHFVTSALSKAGNTTQFGFSVTATSTANLPGLNTLGLVLVRVDIAGNGIVPPHAHPRASEVTTCLNGRLLVGFVDTNNRVFTQNLSPGESFVFPKGLVHFLYNRDSREPALAISGLNSQNPGSQIASIATFASKPPIPDEILKKAFQISQREVETIRRNLGG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01148 219 Gene3D Jelly Rolls 25 219 IPR014710 -
Pumo8g01148 219 FunFam germin-like protein subfamily 2 member 1 25 219 - -
Pumo8g01148 219 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Pumo8g01148 219 PRINTS Germin signature 140 160 IPR001929 GO:0030145
Pumo8g01148 219 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Pumo8g01148 219 CDD cupin_OxOx 26 217 IPR001929 GO:0030145
Pumo8g01148 219 ProSitePatterns Germin family signature. 105 118 IPR019780 GO:0030145
Pumo8g01148 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 23 213 - -
Pumo8g01148 219 Pfam Cupin 67 210 IPR006045 -
Pumo8g01148 219 SUPERFAMILY RmlC-like cupins 54 217 IPR011051 -
Pumo8g01148 219 SMART Cupin_1_3 63 211 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01148 Pumo-Chr8 41679791 41680874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01148 26 218 Miscellaneous Gene Families AT5G39130 44.949 1.74e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01148 - - gmx:100500154 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01148 8 41679791 41680874 Pumo8g01148 8 41679791 41680874 ECH