Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01122 ATGAACTATCAGCTGCTACAGATAGTTGCACTGCTGACAGTGACAGCATTTGGAGGAGCATTAAGGAAAACAACAGAAGCATGCAGTTCAGATGACTTGGAAGGTTTGGTGGGCTTCAAGAATGGCATTCAGATGGATACATCTGGCAGGTTGGCAAAGTGGGTTGGTAGGAGCTGCTGTGAATGGGAAGGTGTTGTCTGTGACAATGCAACCACTAGAGTGACACAGGTCAATCTCCCAGGGCTCATTGAAAAAGATTTGTTTCAAACCCAAATGGTTGGCCAGCTTTCTCCTTCCATAACACTCCTCACCTCTCTTGAAATCCTTGATCTTGGTGGCTTAGTAGGCCTCAGTGGGACAATTCCACAAACAATTGGCTTGCAAATGCCAAACCTCCAGAAGCTCTACCTTTTTGGCAACAATTTAACTGGCCCAGTACCAGAAAGCATTGGTGATTTGCCAAACCTCCAGGAACTGGCACTGCATGAAAATAGGATATCTGGGCCACTCCCTTCTAGCCTTGGAAGCTTAAAAAACCTCAAAAGGTTGCTGCTTTACTCAAACCAAATTTCAGGTACAATACCCTTCTCACTTGGGAATTTGACCAATTTGGTAGAATTGGATGTTCATGACAATGCTATTATGGGTCATATACCCGATAGCATTGGTCTGATGCAAGCTCTGAAGAAGCTTGATCTTTCAAGCAATATGCTAAGTGGAAGCATACCTGCTTCACTAACCAATTTAACTGCCATCTCAGTTTTGTACATGGACACCAACTATCTTGAGGGAACCATCCCATTTCCCTCAAGATCTGGTGAAATGCCTTCTCTGGGCTTCTTAAGACTCCACAATAACCACTTGAGTGGAAATATACCTCCAAGTTTTGACTACCTGGTTTCTCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCATTGCCTACTAGTTTGGGCAATTTGCATTCTTTGACAGAGCTTTACCTCAGTGGCAACTCCTTGTCTGGCCAAATACCAAATTCAATAGGCCAACTCTCTCAGCTCATAATGTTAAACATTTCCAATAATTTGATTGAATGGCCATTGCCTCAAGAGATGTCTTCCCTTCAAAACCTTCAGACACTTGATCTCTCTTTCAACCCTTTGAACCTCTCTTCCATTCCACCATGGCTAACAAGCCTATCATCACTTTCCCGCATTTACCTTGCAGGCTGTGGCATCAAGGGCCAAATTCCAGACTCATTGCAAACAACACAGAGTCCAATACAGGAACTGGACTTATCAGGGAACCTTCTCAGTGGACCAATCCCTTCATGGATAGGATCCCTCAGTCAGCTCTACCTGTTAAACCTCTCAAGGAATTCACTTGATTCACGCATACCTGAATCCCTCACAAACTTGCCTGACCTTGGTGTTCTTGATCTTCACTCAAACAAGTTAACAGGCTCCATAACTGGAGCATTTGGCACTGAACAAGGTACTTCTGGTGGGGGGTCACTAACATACATTGATCTCTCTGATAACAACTTCTCAAGTGGTGTTGAGTCAATTGGTGTTGGAGAGCAGTTAAACATTCAGTACCTGAATTTGTCCCATAACCTTCTGAAGGGTACATTGCCTAGTTCCCTTGGGGAACTGAACTCCATTCACAGTTTGGATTTGAGCTTCAACGAATTAGCCTCCAACTTGCCAGAGGTGCTGGCAAAGTTGACCTTGTTGGAGAGACTGAAGCTGCAAGGCAACCACTTCAGTGGTAAAATACCAAGTGGATTTCTCAAGCTGAGAAAGCTGAAGGAATTGGACTTATCAGATAATGTACTTGAAGGGGAAATTCCAGAGGGTAAACCTCTAATTGACTTTCCTGGGAGTACTTATTCTGGAAATGAAGGTTTGTGTGGGAAGCCTCTTAGTCCCTGTAAAGTGTAA 1932 0.4363 MNYQLLQIVALLTVTAFGGALRKTTEACSSDDLEGLVGFKNGIQMDTSGRLAKWVGRSCCEWEGVVCDNATTRVTQVNLPGLIEKDLFQTQMVGQLSPSITLLTSLEILDLGGLVGLSGTIPQTIGLQMPNLQKLYLFGNNLTGPVPESIGDLPNLQELALHENRISGPLPSSLGSLKNLKRLLLYSNQISGTIPFSLGNLTNLVELDVHDNAIMGHIPDSIGLMQALKKLDLSSNMLSGSIPASLTNLTAISVLYMDTNYLEGTIPFPSRSGEMPSLGFLRLHNNHLSGNIPPSFDYLVSLQRVSLSNNKLEGALPTSLGNLHSLTELYLSGNSLSGQIPNSIGQLSQLIMLNISNNLIEWPLPQEMSSLQNLQTLDLSFNPLNLSSIPPWLTSLSSLSRIYLAGCGIKGQIPDSLQTTQSPIQELDLSGNLLSGPIPSWIGSLSQLYLLNLSRNSLDSRIPESLTNLPDLGVLDLHSNKLTGSITGAFGTEQGTSGGGSLTYIDLSDNNFSSGVESIGVGEQLNIQYLNLSHNLLKGTLPSSLGELNSIHSLDLSFNELASNLPEVLAKLTLLERLKLQGNHFSGKIPSGFLKLRKLKELDLSDNVLEGEIPEGKPLIDFPGSTYSGNEGLCGKPLSPCKV 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01122 643 Gene3D Ribonuclease Inhibitor 368 643 IPR032675 -
Pumo8g01122 643 Pfam Leucine Rich Repeat 373 392 IPR001611 GO:0005515
Pumo8g01122 643 Gene3D Ribonuclease Inhibitor 296 367 IPR032675 -
Pumo8g01122 643 ProSiteProfiles Leucine-rich repeat profile. 373 397 IPR001611 GO:0005515
Pumo8g01122 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 559 637 - -
Pumo8g01122 643 Pfam Leucine rich repeat 424 482 IPR001611 GO:0005515
Pumo8g01122 643 Pfam Leucine rich repeat 280 336 IPR001611 GO:0005515
Pumo8g01122 643 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Pumo8g01122 643 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Pumo8g01122 643 Pfam Leucine Rich repeat 596 612 IPR001611 GO:0005515
Pumo8g01122 643 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 363 643 - -
Pumo8g01122 643 SUPERFAMILY L domain-like 57 384 - -
Pumo8g01122 643 SMART LRR_typ_2 299 322 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 596 618 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 469 492 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 371 396 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 548 571 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 225 249 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 153 177 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 201 224 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 572 595 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 323 347 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 445 468 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 275 298 IPR003591 -
Pumo8g01122 643 SMART LRR_typ_2 129 152 IPR003591 -
Pumo8g01122 643 PRINTS Leucine-rich repeat signature 371 384 - -
Pumo8g01122 643 PRINTS Leucine-rich repeat signature 228 241 - -
Pumo8g01122 643 SUPERFAMILY L domain-like 272 616 - -
Pumo8g01122 643 SMART LRR_sd22_2 177 203 - -
Pumo8g01122 643 SMART LRR_sd22_2 596 619 - -
Pumo8g01122 643 SMART LRR_sd22_2 371 388 - -
Pumo8g01122 643 SMART LRR_sd22_2 323 349 - -
Pumo8g01122 643 SMART LRR_sd22_2 548 567 - -
Pumo8g01122 643 SMART LRR_sd22_2 225 251 - -
Pumo8g01122 643 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 74 318 - -
Pumo8g01122 643 Gene3D Ribonuclease Inhibitor 81 295 IPR032675 -
Pumo8g01122 643 Gene3D Ribonuclease Inhibitor 24 80 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01122 Pumo-Chr8 41356422 41358614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01122 4 643 Receptor kinase-like Gene Family AT4G08850 32.511 3.05e-88 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01122 - - gmx:100799647 1122.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01122 8 41356422 41358614 Pumo8g01122 8 41356422 41358614 ECH
Pumo8g01122 8 41356422 41358614 Pumo8g01122 8 41356422 41358614 PCT