Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01060 ATGTTGGACGGTCGCTCCTGCGTTGTTCCAAGGTTGTTTTCCAGCACTTGCCAGGCAGAGAACGACTGGTCTTACATGAAGTGCTTGCTGGAGTTGGACATCAAGAATGGCAAGCGCCCTATGGAGATTGATGATGTTGAGGATGAGCCCCAGCAGCCAAGGAAGTGTATTAAGAAGTTGGATTCTTGCCATAGAGTTGAAATGGCTCGAATTTCGTTACAAAGGCAATCTATCGAGGCCGAGGATTCTGTTGTTCCCCCAATGGATCAGGAGACCAATGAGCCATTGAGTGTTTGTCAAGGAGTTGTTGGAGAAGATGATGGAGCTTTGACTGACCGGCTATTGGATGAGAAAGAACAGGAGGGTGGTGATGCTGATTTGATGGATTTTGGTGACCATCAATCTGATAAACAGCAGCAGGCTCAGCTTGGGGATTCATCAGATTTCGGTGTTCGGCTATCTGATGAAGATCAGTTGCAGCATGATGAGAATTTATCGAATTCAAGTGAGCAGCAATCCGAGGAGCAGCAGCATCACCATGGTGGGGATTCTTCAGATTCCGGTTCTCTCTTGCCACGCATGAACCGCGACAGCTCAATCGCCTGTCTCAGCCGCTGCTCAAGGTCAGATTACGGTTCTCTCGCCTCACTGAATAGGAGCTTCCGGAACATAATCCGAAGTGGCGAGCTCTATCAATGGAGGAGACTGAATGGTATCATGGAGCACTGGATTTATTTTTCCTGCGCCCTCCTCGAATGGGAGGCCTATGATCCAATCCGCCAGCGGTGGATGCATTTGCCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCAGATAAGGAATCTTTAGCTGTAGGTACTGAGCTACTTGTGTTTGGGAGGGAGATGAAATCCCATGTCATTTACAGATACAGTCTCTTGACAAACTCGTGGACATCCGGAATGAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGCCTTGGAGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTTGACTCTGTTGAACTGTATAATTCCGAGACTCAAACATGGGAAACACTCCCAAGTATGAAAAAACCCAGGAAAATGTGTTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATAGGGGGGATTGGGGGGAGTGATTCTAAGCTCCTCACATGTGGAGAGGAGTACAATTTACAGACTAGGACATGGACTGAGATTCCTAACATGTCCCCCGGACGAAGTAGTAGGGGTCCTGAGATGCCTGCAACGGCCGAGGCACCACCTCTGGTTGCTGTTGTAAATGATGAATTGTATGCTGCTGATTATGCTGACATGGATGTTAAGAGGTATGACAAGGAGAGAAAATTGTGGTCTACCATTGGGAGGCTGCCGGAACGAGCAGTGTCGATGAATGGCTGGGGTCTTGCATTCAGGGCATGTGGAGATAAGCTTATTGTCATTGGTGGACCTAGGACTCATGGTGAGGGTTTTATTGAACTCAATTCATGGGTGCCTAGTGAAGGACCTCCACAGTGGGATCTACTTGCTAGAAAACGTTCTGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA 1614 0.4746 MLDGRSCVVPRLFSSTCQAENDWSYMKCLLELDIKNGKRPMEIDDVEDEPQQPRKCIKKLDSCHRVEMARISLQRQSIEAEDSVVPPMDQETNEPLSVCQGVVGEDDGALTDRLLDEKEQEGGDADLMDFGDHQSDKQQQAQLGDSSDFGVRLSDEDQLQHDENLSNSSEQQSEEQQHHHGGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNIIRSGELYQWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGREMKSHVIYRYSLLTNSWTSGMRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSVELYNSETQTWETLPSMKKPRKMCSGVFMDGKFYVIGGIGGSDSKLLTCGEEYNLQTRTWTEIPNMSPGRSSRGPEMPATAEAPPLVAVVNDELYAADYADMDVKRYDKERKLWSTIGRLPERAVSMNGWGLAFRACGDKLIVIGGPRTHGEGFIELNSWVPSEGPPQWDLLARKRSGNFVYNCAVMGC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01060 537 MobiDBLite consensus disorder prediction 76 100 - -
Pumo8g01060 537 SMART kelc_smart 380 440 IPR006652 GO:0005515
Pumo8g01060 537 SMART kelc_smart 332 379 IPR006652 GO:0005515
Pumo8g01060 537 SMART kelc_smart 288 331 IPR006652 GO:0005515
Pumo8g01060 537 Pfam Kelch motif 368 415 IPR006652 GO:0005515
Pumo8g01060 537 Pfam Kelch motif 320 365 IPR006652 GO:0005515
Pumo8g01060 537 Gene3D - 246 521 IPR015915 GO:0005515
Pumo8g01060 537 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 177 537 - -
Pumo8g01060 537 MobiDBLite consensus disorder prediction 123 191 - -
Pumo8g01060 537 FunFam F-box/kelch-repeat protein SKIP11 236 522 - -
Pumo8g01060 537 SUPERFAMILY Kelch motif 250 533 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01060 Pumo-Chr8 39581085 39584717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01060 197 413 EF-hand Containing Proteins AT4G39560 26.267 2.44e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01060 - - gmx:100818865 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01060 8 39581085 39584717 Pumo8g01060 8 39581085 39584717 ECH