Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02154 ATGTCTGGTCACTGGGGGATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACACAAGTGGAGCTTCGTAGCCTAAAGTCCCATTTCGTGAGCATGAGGAGAGACAGTGGGAGGCTTGTGATTGCGGATTTGGCTTCCAAGATGTCAAGGTTGAAGGTGGTGGGAGAGAATCTGAGTGAGGAAGAAAGAGCTTCTTGTGTGAAGGATTTGTATCAGAACACTGAAGAGGAGGTTGATTTTGAATTGTTTCTTAAGGTCTACTTGAAACTCCAAACATTTGCGAATTCTAGAACCGGAAGTAGTCCAAAGAACTCATCAGGCGTTCCTCAAGGCAGCTACAACCACATTGCTTCACACAATAACAAGCTTATCAATGTGGCAGTTCCAGGGACCATTGATGAACGGGCGATCAATACAAAAAGAATACTCAATCCATGGGAAAGGAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGTTGTACAGTGGTCAACATTGGCACTCAGGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGGGTGATTTCTCAGATTATTAAGATACAATTATTGGCGGACCTCGATTTGAAGAAAACTCCCCAGCTTCTTGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTACCCCCAGAAAAAATCTTGTTAAGGTGGATGAATTTCCATTTGAAGAAAGCAGAGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTGCACCTGAATACACTAATCCCTCCACATTGGCAGTTAAAAATCCCTTTGAAAGAGCAAAGTTAGTTCTTGAACATGCTGATAAGATGGGTTGCAAGCGATACTTAACTGCGAGAGACATAGTGGAAGGATCTCCAAATCTTAATCTTGCCTTTGTTGCACATATTTTCCAGCACAGGAACGGACTTTCAGCCCAGACAAAACAACAGATGTCTCTCCTTGAAACATTTCCAGATGACACTCAAGACTCTAGAGAAGAAAGAGCATTTCGCCTTTGGATGAATAGCCTTGGAAATTCAACATATATCAACAATGTCTTCGAGGATCTCCGAAACGGGTGGGTTCTTCTAGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATTGCTAACAAGCCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAACCAAGTTGTGAAAATAGGGAAACAGCTAAAATTTTCACTGGTAAATGTTGCTGGAAACGACATTGTGCAGGGAAATAAAAAATTAATACTAGCTTATTTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTTGAGATTTCACTCTCGTGGGAAGGAAATAAATGATGCTGATATTTTAGAGTGGGCCAACAGCAAGGTTAGCAGCTCCGGAAGCCAAAGCCGCATGGACAGTTTTAAGGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGCAACCCAGAGCCGTGAATTGGGGTCTTGTAACAAAAGGAGTAACCGACCAAGAGAAAAAGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCTATATTCCTGCTTCCTGAAGACATCACTGAGGTGAATCAAAAAATGATCCTTACACTAACAGCTAGTATAATGTCTTGGTGCCTAAAGCACCCTCATGAAGAAAGGACAGTGGGAACTTCAGATAATGAGAGTGGGAGTCAATTGGAGACTACATCAAATTCAACACTAGATGACTCTGCCTCTGATTCATCAATAGATGAGAATGGGAACATCCATGTTGTTAGGGTTAAAAGCTCAAGTGGACTCAATTATGATACTCTTGATGCCTTGAACACAAATGATGTAAAGAAGGTTGGTCAGCCTTGTCCTCGAGCAATTGCTGCTATTGCTAGGGAAACAATTCTCGAAGTGGCAAGTGGAACAAATCAAACAGGTAGGGTTTTGGTGGTTATGGAAGGCCAATGCTTAGTTCCATATTGGGTTGCCAATGTTTTGTGA 2088 0.4148 MSGHWGILVSDPWLQNQFTQVELRSLKSHFVSMRRDSGRLVIADLASKMSRLKVVGENLSEEERASCVKDLYQNTEEEVDFELFLKVYLKLQTFANSRTGSSPKNSSGVPQGSYNHIASHNNKLINVAVPGTIDERAINTKRILNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLDLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLKKAEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLSAQTKQQMSLLETFPDDTQDSREERAFRLWMNSLGNSTYINNVFEDLRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSRGKEINDADILEWANSKVSSSGSQSRMDSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKKMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWCLKHPHEERTVGTSDNESGSQLETTSNSTLDDSASDSSIDENGNIHVVRVKSSSGLNYDTLDALNTNDVKKVGQPCPRAIAAIARETILEVASGTNQTGRVLVVMEGQCLVPYWVANVL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02154 695 ProSiteProfiles Calponin homology (CH) domain profile. 85 195 IPR001715 GO:0005515
Pumo7g02154 695 Gene3D - 201 329 IPR036872 -
Pumo7g02154 695 CDD CH_AtFIM_like_rpt2 215 323 - -
Pumo7g02154 695 FunFam Fimbrin-2 like 345 462 - -
Pumo7g02154 695 Pfam Calponin homology (CH) domain 224 325 IPR001715 GO:0005515
Pumo7g02154 695 Pfam Calponin homology (CH) domain 473 577 IPR001715 GO:0005515
Pumo7g02154 695 Pfam Calponin homology (CH) domain 351 454 IPR001715 GO:0005515
Pumo7g02154 695 Pfam Calponin homology (CH) domain 123 192 IPR001715 GO:0005515
Pumo7g02154 695 CDD CH_AtFIM_like_rpt3 347 460 - -
Pumo7g02154 695 Gene3D - 463 575 IPR036872 -
Pumo7g02154 695 ProSiteProfiles Calponin homology (CH) domain profile. 223 326 IPR001715 GO:0005515
Pumo7g02154 695 Gene3D - 86 200 IPR036872 -
Pumo7g02154 695 FunFam Fimbrin-1 isoform A 463 575 - -
Pumo7g02154 695 FunFam Fimbrin-2 isoform A 201 329 - -
Pumo7g02154 695 MobiDBLite consensus disorder prediction 590 616 - -
Pumo7g02154 695 MobiDBLite consensus disorder prediction 584 616 - -
Pumo7g02154 695 SUPERFAMILY Calponin-homology domain, CH-domain 123 574 IPR036872 -
Pumo7g02154 695 ProSiteProfiles Calponin homology (CH) domain profile. 349 455 IPR001715 GO:0005515
Pumo7g02154 695 SMART ch_5 472 576 IPR001715 GO:0005515
Pumo7g02154 695 SMART ch_5 87 193 IPR001715 GO:0005515
Pumo7g02154 695 SMART ch_5 351 453 IPR001715 GO:0005515
Pumo7g02154 695 SMART ch_5 225 324 IPR001715 GO:0005515
Pumo7g02154 695 Gene3D - 345 462 IPR036872 -
Pumo7g02154 695 ProSiteProfiles Calponin homology (CH) domain profile. 470 578 IPR001715 GO:0005515
Pumo7g02154 695 PANTHER FIMBRIN/PLASTIN 122 580 IPR039959 GO:0051015|GO:0051017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02154 Pumo-Chr7 59204523 59215487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02154 346 608 EF-hand Containing Proteins AT5G55400 21.379 3.05e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02154 - K17275 gmx:100799696 1165.98