Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g02056 ATGGCACAAATAGTTCTGCTTGCTTTGGTACTATTTTTGTTCACATTTACATCAGCCGTAGCTGAGGGGGTAATAACTTTGAATGTTGTCAATTTCGGGGCCAAGCCAGATGGTGAAACTGACTCCACAAATGCATTCCTCAGTGCATGGGGTAGAGCATGCAGCTCAACAACACCAACCACCATTTATGTGCCACTAGGAAGGTTCTTAGTTGGTAAAGTAATGTTTAAGGGGAGATGCAACAACAAGGGCATCACAATTCGCATTGATGGTGCACTGGTTGCACCTTCCAACTATGATGTTGTTGGAAATGCTGGAAATTGGTTGTTTTTCGATGATGTCGATGGCGTTTCGGTCGTTGGTGGTGTTCTTGATGGCCAAGGCACAGACCTGTGGGCATGTAAGAGATCTGGCAAGACTTGCCCAACTGGTGCCACGAACTTGGGATTTACCAATTCCAACAACATTGTTATCAATGGGGTGACCTCTCTGAACAGCCAAATGTTCCATATAGTTATTGACCGATGTGATAATGTGAAAGTACAAGGTGTTAAGGTATCAGCTGCAGGAAACAGTCCTAACACTGATGGCATTCACGTTCAACTCTCATCAACTGTCACCATTCTCAACTCCAACATAGCAACCGGTGATGACTGCATCTCAATTGGTCCTGGAACCACTAATTTGTGGATAGAAAACATAGCTTGTGGACCGGGTCATGGAATCAGTGTTGGAAGTTTAGGCAAGGAATTTCAAGAGCCTGGTGTGCAAAATGTGACAGTTAAAACAGTGACATTTACTGGAACTGAAAATGGTGTACGAATTAAGTCTTGGGGGAGACCTAGCAATGGGTTTGCAAGGAACATCCTTTTCCAACATGCTACCATGCTTAATGTCCAAAATCCCATTGTGATTGACCAAAATTATTGCCCCCATGAAAAGAATTGTCCGGGTCAGGTTTCTGGGGTTGAAATTAGCAACGTTATATACCAAGATATTCATGGAACCTCAGCAACAGAGATTGCAGTTAAAATGAATTGTAGTCCAAAGTATCCATGCACTGGAATAACTTTGGAAGATGTGATGCTTACATATGAAAGCAAACAAGCTGTGGCTTCATGCAATCACGCTGGAGGAATCACATCTGGTTTAGTTCAACCCAACAACTGCTTCTAG 1176 0.4311 MAQIVLLALVLFLFTFTSAVAEGVITLNVVNFGAKPDGETDSTNAFLSAWGRACSSTTPTTIYVPLGRFLVGKVMFKGRCNNKGITIRIDGALVAPSNYDVVGNAGNWLFFDDVDGVSVVGGVLDGQGTDLWACKRSGKTCPTGATNLGFTNSNNIVINGVTSLNSQMFHIVIDRCDNVKVQGVKVSAAGNSPNTDGIHVQLSSTVTILNSNIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLGKEFQEPGVQNVTVKTVTFTGTENGVRIKSWGRPSNGFARNILFQHATMLNVQNPIVIDQNYCPHEKNCPGQVSGVEISNVIYQDIHGTSATEIAVKMNCSPKYPCTGITLEDVMLTYESKQAVASCNHAGGITSGLVQPNNCF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g02056 391 FunFam Polygalacturonase 7 17 390 - -
Pumo7g02056 391 Gene3D - 15 390 IPR012334 -
Pumo7g02056 391 Pfam Glycosyl hydrolases family 28 54 375 IPR000743 GO:0004650|GO:0005975
Pumo7g02056 391 PANTHER - 25 377 - -
Pumo7g02056 391 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Pumo7g02056 391 SUPERFAMILY Pectin lyase-like 10 391 IPR011050 -
Pumo7g02056 391 SMART pbh1 176 202 IPR006626 -
Pumo7g02056 391 SMART pbh1 226 246 IPR006626 -
Pumo7g02056 391 SMART pbh1 203 224 IPR006626 -
Pumo7g02056 391 SMART pbh1 320 360 IPR006626 -
Pumo7g02056 391 SMART pbh1 286 307 IPR006626 -
Pumo7g02056 391 SMART pbh1 256 277 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g02056 Pumo-Chr7 56045949 56048413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g02056 9 388 Glycoside Hydrolase AT2G43870 64.829 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g02056 K01184 - gmx:100784002 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g02056 7 56045949 56048413 Pumo7g02056 7 56045949 56048413 ECH