Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01960 ATGGAAGCGCTGAAACTGTGCAATCTAACATGGAACCCACTGAAGCACTTCTTTCACTCTCACGCATTTCGTCGAACACCTCGCATGCTCGTTCTCCGCGCGTGCTCGTCTTCCACCGCCGCCGACACCAGAGCCGCCGGTCGCAACCGCCGGAGCTCGGCGTCGTCGTCCACCACTTCGACTTCCGATAGGGACGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCGTATGCTTATGAATGGGACAAAACTCACGGTGCTAATCAACTGCAAGATATCTACAGAGATCTAGAAAATGGTGAGGAAAAAAATAGTGAGAATGACCACGTATCTGTCGCGGGAAGAATTGTTGCAAGGAGGGCATTTGGAAAGCTTGCCTTTCTGACACTAAGAGATGATTCAGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGGTGATCAGTTTGAACAGTTAAAGGCCCATGTTGATATTGGTGATATATTAGGTGTAAGAGGAACAATAAAACGCACAGAAAAAGGAGAACTTTCTGTGTCTGTGCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATCGTCAGAGGTATGTAGATATGATCGCAAATCCAGAGGTAGCAGATGTATTCCGTAAAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCATTTATTACATACCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATACGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGACATAATCCTGAATTTACAACTATAGAGATGTATGAAGCATACTCGGATTATCAAAGCATGATGAATTTGGCAGAGGAGATCGTCACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTACCGTTGATTATCAGGGAGTTGAGATATGTCTGGAAAGGCCCTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAATTTCCGGGATCGATTTCAATGAATTGGGAAATGATCTTGAGGTTGCAAAGCAAGTTACTCTGGATACCCTTGGAAAGAATCTTGATAACAAGGATAAAGGTTCCATTGAAGCATGCCAATCCGTTGGCCACCTCCTTAACGAGGTTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAGATATCTCCACTGGCCAAACCACACAGAAGATCCACAGGTTTGACAGAGAGATTTGAACTTTTCATTTGTGGTCGTGAGCTGGGCAATGCATTCTCCGAATTGACTGATCCTATAGATCAGAGAGGACGCTTAGAAGATCAAATTAGGCAGCATGAAAAGAAGAGAACAGCTGTTTCAACAAATGATGATAAAAAGGAAGGAATGGAAGATGATGATGACTCGTATGAAGTGACTCTTGATGACGACTTTCTTACAGCTTTGGAATACGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATTGATAGGCTCGTGATGCTTTTGACAAATTCTCCCAGTATTCGGGATGTTATCGCCTTCCCAGTACTCAAGGTCCAGCAATAG 1752 0.4309 MEALKLCNLTWNPLKHFFHSHAFRRTPRMLVLRACSSSTAADTRAAGRNRRSSASSSTTSTSDRDAIRAIRLKKVEELRSKGLDPYAYEWDKTHGANQLQDIYRDLENGEEKNSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIGDQFEQLKAHVDIGDILGVRGTIKRTEKGELSVSVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALAVHGKLTVDYQGVEICLERPWRRETMHNLVKEISGIDFNELGNDLEVAKQVTLDTLGKNLDNKDKGSIEACQSVGHLLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKRTAVSTNDDKKEGMEDDDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01960 583 NCBIfam lysine--tRNA ligase 69 581 IPR002313 GO:0004824|GO:0005524|GO:0006430
Pumo7g01960 583 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 235 577 IPR006195 -
Pumo7g01960 583 MobiDBLite consensus disorder prediction 503 521 - -
Pumo7g01960 583 SUPERFAMILY Nucleic acid-binding proteins 64 206 IPR012340 -
Pumo7g01960 583 CDD LysRS_core 228 580 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pumo7g01960 583 FunFam Lysine--tRNA ligase 209 583 - -
Pumo7g01960 583 Hamap Lysine--tRNA ligase [lysS]. 70 582 IPR002313 GO:0004824|GO:0005524|GO:0006430
Pumo7g01960 583 SUPERFAMILY Class II aaRS and biotin synthetases 213 579 IPR045864 -
Pumo7g01960 583 Gene3D - 57 208 IPR012340 -
Pumo7g01960 583 MobiDBLite consensus disorder prediction 503 530 - -
Pumo7g01960 583 CDD LysRS_N 118 225 IPR044136 GO:0000166
Pumo7g01960 583 FunFam Lysine--tRNA ligase 64 206 - -
Pumo7g01960 583 PRINTS Lysyl-tRNA synthetase signature 295 308 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pumo7g01960 583 PRINTS Lysyl-tRNA synthetase signature 313 330 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pumo7g01960 583 PRINTS Lysyl-tRNA synthetase signature 266 282 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pumo7g01960 583 PRINTS Lysyl-tRNA synthetase signature 446 462 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pumo7g01960 583 PRINTS Lysyl-tRNA synthetase signature 250 260 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Pumo7g01960 583 Pfam tRNA synthetases class II (D, K and N) 215 579 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pumo7g01960 583 Pfam OB-fold nucleic acid binding domain 119 194 IPR004365 GO:0003676
Pumo7g01960 583 PANTHER LYSYL-TRNA SYNTHETASE 46 582 - -
Pumo7g01960 583 Gene3D Bira Bifunctional Protein; Domain 2 209 583 IPR045864 -
Pumo7g01960 583 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01960 Pumo-Chr7 52903181 52914038 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01960 K04567 - gmx:100787720 1093.57