Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo7g01935 | ATGAAAAGGCTAAACTTTATAAACCCTATCTTATCCCCCATTTGTGGAAGAAGCAACAACCGTGGTGGTGGAGTCATGGGAATCCTCGCTTTGCCCTTAGTCATCTCCTTTCTCAAACCCCACACCACCACTCGCCTCTCCCTCCTCCGCCGCCACCGCCACTTTGCCACCACCGTCTCCGCCGCCACCACTCCCTCTTCTCCTTCACCTTCACCTTCACTCTCACGCCACTCTTCTTCTACTTCTTCTTCAACAACTCACTCCAACACTCGTTCCCCTAACTCCTCAACCCTCACTTTTCAGCAAGCCATTCAGCGCCTTCAGGAATATTGGGCTTCCGTTGGATGCTCCATAATGCAATGCAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTCGGCCCTGAACCGTGGAATGTTGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCGCAGGATCTATTTATCCGCAGCCTCTCTGCTTTAGGTATTGATGTTACCGCACATGATATACGGTTTGTGGAAGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATCTGGATGGATGGGATGGAGATTACACAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCGCCTGTATCTGTAGAAATTACTTATGGCCTCGAGCGTATCCTCATGTTACTGCAGGGGGTTGATCATTTCAAGAAGATCAAATATTCTGATGGAATTACATATGGAGAGTTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATATTACTTGGAGCATGCTAGTGTTGACCACGTTCAAAAACATTTTGATTTCTTCGAGGAGGAAGCTCGTAGCTTACTTTCTTCTGGCCTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCACAACTTTGGTTGAAGACAAGAGAGATGCTTGGCTTTCCCCTTGGTTTTATCTCTGAACCTGATCATTTTGTATTGCCAAAAGAAGTTTTGGAGGCTACATGTGAGAAGGTGCATGATCATTCAAGAGCATTTGTTCTTGAAATTGGGACTGAAGAGATGCCACCTCAAGATGTTGTTAACGCAAGCAAACAACTGAAAGATTTATTGCTGCAACTGCTTGAACGGCAAAGGTTAAACCATGGTGAAGTGCAAGCTTTTGGCACCCCACGTAGATTAGTGGTTGCTGTTGAAAATCTTTGCACCAAACAGGCAGAAAAGGAGGTTGAAGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCATGAAGGAAATCCAGCAAAGGCCATTGAGGGTTTTTCTCGTAGATACTCTGTTCCACTTGATCTGGTATACAGAAAGGTCGATGGGAAAACGGAATATGTTTATGCACGTATAAAGGAGTCTTCAAGACATGCTTTGGAGGTTTTGTCTGAAGATTTGCCTGCTACTATTGCTAAAATTTCATTTCCCAAGACAATGCGTTGGAATTCTCAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTGGCCCTTCATGGAGATGTAGTAGTCCCGTTTATGTTTGCTGGGGTGACGAGTGGAAACTTGACTTGCGGTCTTCGTAATACTTCTTCAGCTGTTGTCCAGGTGGAAAGTGCAGAATCTTATTCAGTTTCAGTGAAAAATGTGGGAATCAATGTTTCAGTTGAGGACCGTAAGAAAATTATTTTTGAGCAATCTAATGCATTAGCAGAAAGTGTAAATGGCCAAATTCTTATTCCAAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCACCTTTTCCTGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAAGATCTATTGACTATGGTTATGCAAAAGCATCAAAAGTATTTTGCTGTATGTGATGCTAATGGACAATTATTGCCTTATTTTGTTGCTGTTGCAAATGGAGCAATTGATGAGACTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGTTATGAAGATGCTAAGTTCTTTTATGAGATGGACACTCGTAAAAGATTTTCAGAATTCCGAAAGCAACTGAAAAACATTCTCTTTCATGAGAAGCTTGGAACCATGCTGGATAAGATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCATCCTAGATATCAATGAAGATGTGCAACAAATTATCCGGGATGCTGCCTCACTTGCTATGTCTGATCTTGCCACTGCAGTTGTCACTGAATTTACCTCACTTTCGGGAATTATGGGGTGTCATTATGCCCTTAGAGATGGATACTCAGAGCAGATTGCAGAGGCCTTGCTTGAGATCACGCTTCCTAGATTTTCTGGGGACATACTTCCCACAAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTTACTGCTGGTTGTCAACCTAGTTCCACAAATGATCCATTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAACTATTGGTGGAAAAGAATAAAAATCTAAATTTTAAGAAGGCCCTGGAACTTGCTGCAGATGTCCAGCCCATTAAAGTAGATCCTCATGTAATAGATGATGTACATCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTTGACAAGGGGGTGAATGCAGAATTTGTTCGATCGATCCTTATAGAAAGAGCAAATTTTCCCTGTCTTGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAGAGGTAACCTTTTTCCTAAAGTAGTTGAAGCATACTCCCGGCCAACAAGAATTGTCCGTGGGAAAGAAGATGAACTTCATATGGAGGTGGATGAGACTGCTTTTGTGACAAATGAAGAGAGGGTTTTATGGAGCACATTTTTGTCAGTCAAAAAGAGTATCAATCCTGGTCTTGAGATTGATGATTTTGTAGAAATTTCATGTCTGTTAATACAGCCGCTTGAGGATTTCTTCAATAATGTCTTCGTAATGGTGGACGATGACAAGATCAGAGTAAACAGGTTAACTCTGCTAAAAGGAATTGCTGAACTCCCTAAAGGAATAGCAGACCTTACTGTTCTGCCAGGATTTTAA | 3285 | 0.4244 | MKRLNFINPILSPICGRSNNRGGGVMGILALPLVISFLKPHTTTRLSLLRRHRHFATTVSAATTPSSPSPSPSLSRHSSSTSSSTTHSNTRSPNSSTLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARSLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDHFVLPKEVLEATCEKVHDHSRAFVLEIGTEEMPPQDVVNASKQLKDLLLQLLERQRLNHGEVQAFGTPRRLVVAVENLCTKQAEKEVEVRGPPVSKAFDHEGNPAKAIEGFSRRYSVPLDLVYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVTSGNLTCGLRNTSSAVVQVESAESYSVSVKNVGINVSVEDRKKIIFEQSNALAESVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFVAVANGAIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFSEFRKQLKNILFHEKLGTMLDKMTRVENMVTKLSCILDINEDVQQIIRDAASLAMSDLATAVVTEFTSLSGIMGCHYALRDGYSEQIAEALLEITLPRFSGDILPTSDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLNFKKALELAADVQPIKVDPHVIDDVHQFVTRRLEQFLVDKGVNAEFVRSILIERANFPCLAAKSAYKMEELSRGNLFPKVVEAYSRPTRIVRGKEDELHMEVDETAFVTNEERVLWSTFLSVKKSINPGLEIDDFVEISCLLIQPLEDFFNNVFVMVDDDKIRVNRLTLLKGIAELPKGIADLTVLPGF | 1094 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo7g01935 | 1094 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 767 | 1056 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | FunFam | Glycine--tRNA ligase alpha subunit | 92 | 301 | - | - | |
| Pumo7g01935 | 1094 | Pfam | Glycyl-tRNA synthetase alpha subunit | 100 | 377 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 204 | 228 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 338 | 354 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 230 | 250 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 173 | 193 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 152 | 167 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 253 | 268 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | SUPERFAMILY | HD-domain/PDEase-like | 740 | 889 | - | - | |
| Pumo7g01935 | 1094 | CDD | GlyRS_alpha_core | 99 | 377 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 410 | 1091 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | FunFam | Glycine--tRNA ligase, chloroplastic/mitochondrial 2 | 302 | 381 | - | - | |
| Pumo7g01935 | 1094 | Pfam | Glycyl-tRNA synthetase beta subunit | 413 | 956 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | NCBIfam | glycine--tRNA ligase subunit beta | 413 | 1090 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | SUPERFAMILY | Class II aaRS and biotin synthetases | 99 | 377 | IPR045864 | - | |
| Pumo7g01935 | 1094 | NCBIfam | glycine--tRNA ligase subunit alpha | 99 | 383 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 98 | 378 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | Gene3D | Bira Bifunctional Protein; Domain 2 | 85 | 301 | IPR045864 | - | |
| Pumo7g01935 | 1094 | PANTHER | GLYCYL-TRNA SYNTHETASE | 96 | 1092 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 302 | 381 | - | - | |
| Pumo7g01935 | 1094 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 99 | 373 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Pumo7g01935 | 1094 | MobiDBLite | consensus disorder prediction | 59 | 97 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo7g01935 | K14164 | - | gmx:100787365 | 1958.73 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo7g01935 | 7 | 51368332 | 51388049 | Pumo7g01935 | 7 | 51368332 | 51388049 | ECH |