Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01866 ATGTTCCTTTCACTCAGATACTCCTTCACGTTCTTCTTCACTCTCCTCCTCTTATCACCTTCACACATTACTTCAACAACAACACCATCAGCCACCAAAATAGCCATCACAAACCGCAACATCCAAAGCCTCAACAATGCTGGCAGAGGCACCAAAATCAAAGGCATATCACAATTCAAACGATACCTCCATCGTTTCGGGTACTTACAAAACAACAACACATTCAGTGATGAATTTGATGCCACGTTGGAATCGGCTCTCGTTAGATACCAACGAAACCTTGGACTCCAAGTAACCGGGAAGCTCGATTCCAACACGGTTTCTCAAATGATCACACCAAGATGCGGTGATCCAGACACAAACACAACAACACCCCATCATCACAATCACGTTCACAACGTGCATTCAACAAAAAAATTTGTGTTTTTCCCTGGAAAACCACGTTGGTCACGTCCCATGCCAATGACACTCACCTATGGCTTCTCACGTGAGAACATGATCCATAGTTTGAGCATGAAGGAGATAAGAGAGGCATTCCAACGTGCATTCTTAAGGTGGGCCTCGGTTATTCCGGTTAGTTTTGTTGAGGTGAGTGACTTTGAATTTGCCGATTTAAAAATAGGGTTTTACAATGGGGAGCATGGTGATGGTGAGCCCTTTGATGGGGTGCTTGGAGTGCTGGCCCACTCCTTCTCGCCAGAGATTGGCCGCCTCCACCTCGACGCGGCCGAGACGTGGGCGGTGGACTTCCGGTCAACTGCGTCAGAGGTGGCGGTGGACTTGGAGTCTGTGGCCACTCATGAGATTGGACACTTGTTGGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTTATGTATCCAAGTTTGAGGCCTAGAGACAAGAGGGCTGATTTGAACATTGATGACATAAAGGGGGTGCAATCTCTATATGGCTCAAACCCTAATTTCAGATCCGAGTGGTCACTAGAGTCCGATATGTCCGCAAATCAAGGTTCTGAGTTTGTCAAACCTTTGAGCTTGGCTTCTAGTTTGATAATTATAATTTTCCTCATTCATAGTTTCTTTGGATGA 1071 0.4613 MFLSLRYSFTFFFTLLLLSPSHITSTTTPSATKIAITNRNIQSLNNAGRGTKIKGISQFKRYLHRFGYLQNNNTFSDEFDATLESALVRYQRNLGLQVTGKLDSNTVSQMITPRCGDPDTNTTTPHHHNHVHNVHSTKKFVFFPGKPRWSRPMPMTLTYGFSRENMIHSLSMKEIREAFQRAFLRWASVIPVSFVEVSDFEFADLKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFRSTASEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANQGSEFVKPLSLASSLIIIIFLIHSFFG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01866 356 PANTHER MATRIX METALLOPROTEINASE 38 314 - -
Pumo7g01866 356 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 141 314 - -
Pumo7g01866 356 Gene3D Collagenase (Catalytic Domain) 47 316 IPR024079 GO:0008237
Pumo7g01866 356 SMART col_5 145 312 IPR006026 GO:0006508|GO:0008237|GO:0008270
Pumo7g01866 356 Pfam Matrixin 153 311 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Pumo7g01866 356 FunFam Metalloendoproteinase 1 46 316 - -
Pumo7g01866 356 SUPERFAMILY PGBD-like 49 120 IPR036365 -
Pumo7g01866 356 Pfam Putative peptidoglycan binding domain 56 110 IPR002477 -
Pumo7g01866 356 CDD ZnMc_MMP 148 311 IPR033739 GO:0008237|GO:0008270
Pumo7g01866 356 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pumo7g01866 356 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pumo7g01866 356 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pumo7g01866 356 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pumo7g01866 356 PRINTS Matrixin signature 110 123 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01866 Pumo-Chr7 49573007 49574568 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01866 - K07999 gmx:100781237 549.28