Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01025 ATGTACTTCTGTTGTTTAATTGGATACCTGGTGCAGAATGATATTTTGTTGAGGCGTTATTCTGTCTTAATTCTGGATGAGGCTCACGAGAGGAGCTTGAACACAGACATTCTGATTGGGATGCTCTCACGTGTAATTAAAACTCGCCAAATGATTTATAAGGAACAGCAGAAGATGATACTTTCAGGGGAAAGTATAAGTCCTGAAAAAATTATTTTTCCATTAAAACTTGTGCTTATGAGTGCCACCTTGCGAGTACAAGACTTCACTTCTGGAAAGTTATTCCATACTCCTCCACCTGTCATAGAAGTTCCTACAAGGCAATTTCCAGTAACAGCGTATTTTGCAAAGAAAACAGAGAAAACAGATTACATTGGAGAAGCATATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTCTTTCTTACTGGGCAAAGGGAAGTAGAGGACTTGTGCAGGAAGTTACGCAAAGCATCAAGGGAGTTTATCAAGAAAAAAGTTGAAGGGTCTGTGGAAACTGATAGCACTGTGGTCCATGAAACAACTTCTGTTGAGGGAGTAAATATTAACGAGATCAATGAAGCATTTGAGGTTCATGGAAGTTCATCCATCCAGCAAACCGATAGATTTAGTGGTTATGATGAAGATGAGGATAATGTAAATGGGGGTGAGTCTGATTTTTCTTATGATTCGGAAACAGAGAGTGAACTGGAATTTAATGATGATGATGATAATATTGAGCTTTCAGAGAACAAAAGTAATATTGTGGATGTCTTAGGACAGGCAGGAAGTCTTGCTTCACTGAAGGCTGCTTTTGAAAAATTGTCCGGGCAAACCACATTAAGCTCCTCAAATGGAGAGAAGACATTTTCTGTGAATATAGAAGGTAATTTAGATCAATCAAAAGTTTTCAGGGAGAAAAGAGCTAAAGAAAATTGCAGTACTCCAGGTGCACTCTGTGTTCTACCTCTGTATGCCATGCTTCCTGCGGCAGCTCAACTTCGTGTATTTGAAGAAGTCAGGGAGGGAGAGCGGCTTGTTGTTGTTGCCACAAATGTTGCTGAAACATCTTTAACAATCCCAGGGATAAAGTATGTGGTTGATACTGGAAGAGAAAAGGTGAAGAATTATGACCCCTCTAATGGCATGGAGACATATGAAGTACAATGGATAAGTAAGGCATCTGCTGCACAGCGTGCAGGCAGATCTGGAAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCTGCAGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCCGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTGAAATCCATGCATATTAAAAAGGTTGCAAACTTCCCATTTCCTACTTCTCTTAAAGCTGCTTCTCTGCTTGAGGCTGAGAATTGCTTGAAAGCTCTTGAAGCACTTGATAACAAGGACGAACTTACACTTTTAGGAAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTTCTCACTGTTATTAAAAATACAAGACATGAGCATAAATGTAAACCAAATATGCTTTTGGCATATGCTGTTGCAGCCGCTGCAGCTTTGAGCTTGTCAAATCCTTTTGTAATGCAATATGAAGATGATAGCAGCAGAGATTCAGAGATGTCTGAGAAATCTAGCTTGGGAGACAGTGAGAAAGGCATTGGTAAAAAAGAAAAGCCAAGGAAAAAGAAACTAAAAGAAACAGCTAAAGTTGCACGTGAAAAATTTCGAGTTGTCACTAGTGATGCCCTAACCATAGCTTATGCTTTGCAGTGTTTTGAACATTCACAGAAATCAGCAGAATTCTGTGATGACAATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGACAACAGCTACTGAAACTGGTCTTTTATCAAAGTGATAAAGGTGGTTTTGAAGAAGAGTACTCATGGACTCATGGAAGTTTAGAAGATGTAGAACGTGCTTGGCAGGTTTCTTCTGAAAAATATCCTCTTTCTCTGTTTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTACAGCTTCTTCTAGGGCCTCTGATGGACAGAAAACTTCTCATGCTTTAAAGTATCAATCATGCATGGTTGATGAAAGTGTTTTCCTTCATCGTTGGTCATCAGCTTCCATTGTAGGCCCTGAGTTTTTGGTTTACAATGAACTGTTAGAGACCAAAAGACCAAACAAAGAAGGGATAACAAGTGCCAAGAGAGCATATATGCATGGAGTAACAAGTGTAGAGCCAGCTTGGCTAGTTGAGCATGCAAAGTCTTCATGCGTCTTCTCTCCTCCCCTGATGGATCCTAGACCTTATTATGATGCCCAGACTGACCAAGTAAAATGTTGGGTAATCCCAACCTTTGGGCGTTTCTGTTGGGAGCTTCCAAAGCATTCATTGCCCATTAGCAATGATGAACATAGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCATGTTTAAAATCTGTTCGAAAATACATGTCAGCCCCCCCTGAAAGTATTATGAAGAGAGAAGCATTTGGTCAAAAAAGGGTGGGAAATCTTTTAAGCAAGTTAAAGAGCAGGCTGATTGATAGCTCTGCCATGTTAAGATTGGTGTGGAAGGAGAATCCAAGGGAATTATTTTCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCACAAGCACTTTGAAGAGTTATGGTTACAAATGCTTAATGAGCTGCTTATGGAGAAACAAGAACGCCCTCTGCATAAAAGTTCTAAAAAAAAGAAAGGAAAATCTAAATCACTACTACGATAA 2892 0.4032 MYFCCLIGYLVQNDILLRRYSVLILDEAHERSLNTDILIGMLSRVIKTRQMIYKEQQKMILSGESISPEKIIFPLKLVLMSATLRVQDFTSGKLFHTPPPVIEVPTRQFPVTAYFAKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFLTGQREVEDLCRKLRKASREFIKKKVEGSVETDSTVVHETTSVEGVNINEINEAFEVHGSSSIQQTDRFSGYDEDEDNVNGGESDFSYDSETESELEFNDDDDNIELSENKSNIVDVLGQAGSLASLKAAFEKLSGQTTLSSSNGEKTFSVNIEGNLDQSKVFREKRAKENCSTPGALCVLPLYAMLPAAAQLRVFEEVREGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEVQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDNKDELTLLGKAMAHYPLSPRHSRMLLTVIKNTRHEHKCKPNMLLAYAVAAAAALSLSNPFVMQYEDDSSRDSEMSEKSSLGDSEKGIGKKEKPRKKKLKETAKVAREKFRVVTSDALTIAYALQCFEHSQKSAEFCDDNALHFKTMDEMSKLRQQLLKLVFYQSDKGGFEEEYSWTHGSLEDVERAWQVSSEKYPLSLFEERLICQAICAGWADRVAKRITASSRASDGQKTSHALKYQSCMVDESVFLHRWSSASIVGPEFLVYNELLETKRPNKEGITSAKRAYMHGVTSVEPAWLVEHAKSSCVFSPPLMDPRPYYDAQTDQVKCWVIPTFGRFCWELPKHSLPISNDEHRVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKREAFGQKRVGNLLSKLKSRLIDSSAMLRLVWKENPRELFSEILDWFQQSFHKHFEELWLQMLNELLMEKQERPLHKSSKKKKGKSKSLLR 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01025 963 FunFam ATP-dependent RNA helicase DEAH13 460 590 - -
Pumo7g01025 963 SMART ha2_5 474 606 IPR007502 GO:0004386
Pumo7g01025 963 MobiDBLite consensus disorder prediction 553 575 - -
Pumo7g01025 963 Gene3D - 6 107 IPR027417 -
Pumo7g01025 963 SMART helicmild6 313 413 IPR001650 -
Pumo7g01025 963 FunFam ATP-dependent RNA helicase DEAH13 108 213 - -
Pumo7g01025 963 PANTHER ATP-DEPENDENT RNA HELICASE 12 793 - -
Pumo7g01025 963 Pfam Helicase conserved C-terminal domain 301 413 IPR001650 -
Pumo7g01025 963 MobiDBLite consensus disorder prediction 553 585 - -
Pumo7g01025 963 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Pumo7g01025 963 Gene3D - 464 571 - -
Pumo7g01025 963 CDD SF2_C_RHA 322 421 - -
Pumo7g01025 963 Gene3D - 286 434 IPR027417 -
Pumo7g01025 963 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 21 30 IPR002464 -
Pumo7g01025 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 517 IPR027417 -
Pumo7g01025 963 Gene3D - 108 213 IPR027417 -
Pumo7g01025 963 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 454 IPR001650 -
Pumo7g01025 963 Pfam Helicase associated domain (HA2) 475 604 IPR007502 GO:0004386
Pumo7g01025 963 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 690 789 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01025 Pumo-Chr7 19183451 19187886 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01025 K14780 - gmx:100788201 1727.22