LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo7g00850	ATGCAAGCACTGTGTCCTTCACTCCCAGATTGCTCTCTTCAAGTGCCCAGATTCTCAATCAATGCCACTCCTCCAAATTTTTCATCTTTTCTGTCAACCATGAGCCCCTCCAAGGTTGGAATCAAAATGAGTTTGACTTTTGGTTGTGGGATTCACAAACCAGTTTGGAGGAGTAGGTGTGATGGTTTTGGGGTCCAGTGTGTTGCCTCCAATGGAGAAAATGATGATGATGATGGGTTTTACATCAGAAGATGTGTGGAGCTTGCAAGGAAGGCTGTTGGGTTTACCAGCCCCAATCCATTGGTGGGGTGTGTTATTGTAAAGGATGGCAAAGTTGTTGGTGAAGGGTTCCACCCTAAAGCAGGCCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGGTGATTTGGCGCAAAGTGCAACGGCTTATGTGAGCTTGGAACCTTGTAATCATTTTGGTAGGACTCCACCTTGCACTGAAGCTCTGATTAAAGCCAAAGTGAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTGTAGTTGCCTTCAAAGGGGTGGAAAGATTGAGAGATGCAGGAATTGAAGTTGTTGTGGGTGTAGAGGAAGAGCTGTGCAAGAGCCTCAATGAGCCCTATATTCATCGCATGTTGACCGGAAAGCCTTTCCTTACTTTGAGATATTCTCTTTCTGTCAATGGAAACTTTTTGGACTTACTTGGGAATGGAGTTACAGACAGTGGTGGATACTACTCAAGGTTATTACAAGAATATGATGCAGTGGTAATCTCTTCTTCCTTATTCAGTGAAAATTTGTCAATGCCTGCATCTCAAGAACCTGGAGCCAACCAACCAATTTGGATTATAATACATAAAGATCCTGGTTCTTCAAATCAAATTCCACTAGCCATCAATGACGTTACTGGCAAAGTGATAATCTTTACAGACAATAAAACAGTAACAGCTCCTGAAGTGGCTCAACAAGGAATTGAAACTGTAGCTCTGGATCAAATAAATCTGGATGTGATCTTGGATTATTGTAATCGTCAAGGATTGTGCAGTGTTCTGTTAGATATTAGGGGGAGTTTCGGTGATTTTGAAGAGCTTGTTAGGGAGGGTATCAAGAAGAATTATATAAATAAATTTGTCACAGAAATTTTGCCAATTTGGAACAGACGTGCTGAGCCAGATCCTCTACAGACATTGAAGAGCTTAGAGCAAGGAGTAGAAGTGGTAAATTTGAAGTCCAAGGCCTCAGATCAGAGTGTTGTGATTGAGGGATATTTTAAACTTTAG	1296	0.4213	MQALCPSLPDCSLQVPRFSINATPPNFSSFLSTMSPSKVGIKMSLTFGCGIHKPVWRSRCDGFGVQCVASNGENDDDDGFYIRRCVELARKAVGFTSPNPLVGCVIVKDGKVVGEGFHPKAGQPHAEVFALRDAGDLAQSATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVVGMVDPNPVVAFKGVERLRDAGIEVVVGVEEELCKSLNEPYIHRMLTGKPFLTLRYSLSVNGNFLDLLGNGVTDSGGYYSRLLQEYDAVVISSSLFSENLSMPASQEPGANQPIWIIIHKDPGSSNQIPLAINDVTGKVIIFTDNKTVTAPEVAQQGIETVALDQINLDVILDYCNRQGLCSVLLDIRGSFGDFEELVREGIKKNYINKFVTEILPIWNRRAEPDPLQTLKSLEQGVEVVNLKSKASDQSVVIEGYFKL	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo7g00850	431	CDD	Riboflavin_deaminase-reductase	82	194	-	-
	Pumo7g00850	431	SUPERFAMILY	Cytidine deaminase-like	78	217	IPR016193	GO:0003824
	Pumo7g00850	431	ProSitePatterns	Cytidine and deoxycytidylate deaminases zinc-binding region signature.	125	163	IPR016192	GO:0008270\|GO:0016787
	Pumo7g00850	431	PANTHER	CYTOSINE DEAMINASE FAMILY MEMBER	71	213	-	-
	Pumo7g00850	431	ProSiteProfiles	Cytidine and deoxycytidylate deaminases domain profile.	76	198	IPR002125	-
	Pumo7g00850	431	Pfam	Cytidine and deoxycytidylate deaminase zinc-binding region	81	175	IPR002125	-
	Pumo7g00850	431	Gene3D	Cytidine Deaminase, domain 2	67	215	-	-
	Pumo7g00850	431	NCBIfam	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	83	358	IPR004794	GO:0008835\|GO:0009231
	Pumo7g00850	431	Gene3D	Dihydrofolate Reductase, subunit A	216	428	IPR024072	-
	Pumo7g00850	431	FunFam	Riboflavin biosynthesis protein RibD	75	215	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo7g00850	K11752		-	gmx:100786393	757.288

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo7g00850	7	15010215	15013024	Pumo7g00850	7	15010215	15013024	ECH