Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00671 ATGACATTTTGCATCTCCTTTCAGTACCATAGCTTCATGGATAACCTAGTAGCACCTTTTCACCATCTTAATCCTTATTTTGTTCAGAACCCACAACCCCACATGCCACCCAGAAGCCATTCACCCTCTTCAGTTTCTCTTGGGATGTCAGAAACTCAGCTGGTTTCTTCTCCTCAATTTTCCTCACCAAAATTTTCTCCACTCTTTCACCCTTTGGGTGAGATAAGGACTTTGGATTCTGTGAGGGAATTGCATGCCCAGATGATCAAAATGCCAAAAAAAGGGAACTTGGTTACAATGGATGGAAGCATGATGAGAAACTACTTGGAATTTGGAGACTTTGAGTCAGCAACAAAGGTATTCTTTGTGGGTTTTGCAAGGAATTACCTTCTGTGGAACTCTTTTCTTGAGGAGTTTGCAAGTTTTGGAGGTGACTCACATGAGATTCTGGAGGTCTTCAAGGAATTGCATAATAAAGGAGTGAAATTTGACAGTAAAGCTCTCACTGTTGTTCTGAAAATTTGTTTGGCTTTAATGGAGTTGTGGCTTGGGATGGAAGTTCATGCTTGTCTGGTTAAGAGAGGCTTCCATGTTGATGTACACTTGAGTTGTGCATTGATCAATCTCTATGAGAAGTGCTTGGGAATAGAAAGGACAAATCAAGTTTTTGATGAGACCCCACTACAAGAAGATTTCTTGTGGAATACAATTGTTATGGCAAACTTGAGGAGTGAGAGGTGGGAGGATGCCTTAGAACTGTTCCGTCGAATGCAATCAGCTTCTGCCAAAGCCACTGATGGCACCATTGTCAAGCTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGTTATAAGATTTGGAAGAGTGTCAAATACTTCAATTTGCAACTCTATAGTTAGCATGTACTCTAGGAACAATAGACTTGAACTAGCTAGAGCAGCTTTTGATTCAATTGAGGATCATAACTTGGCATCATGGAACTCAATAATTGCGAGTTATGCAGTCAATGGCTGTGTGAATGGTGCCTGGGATATCTTCCAAGAAATGGAGTCTTCCGGCATCAAACCAGACATTATAACTTGGAATTCTCTTTTGTCTGGCCATCTTCTTCAGGGGTCATATGAAAATGTTCTCACCAATTTCCGGAGCCTGCAAAGCGCAGGCTTCAAACCAGATTCATGTTCAATAACTAGTGCTCTACAAGCTGTTATTGAATTGGGTTGCTTTAATTTAGGGAAAGAAATCCATGGTTACATAATGAGAAGTAAACTTGAGTATGATGTCTACGTTTGTACTTCTTTGGTGGATATGTATATTAAGAATGATTGCTTAGATAAAGCTGAAGTAGTGTTCCATCATACAAAGAACAAAAATATTTGTGCCTGGAATTCATTGATATCTGGTTACACCTACAAGGGCTTGTTTAACAATGCTGAAAAACTACTCAACCAGATGAAGGAGGAAGGAATAAAACCTGATTTGGTGACATGGAATAGTTTGGTTTCAGGTTATTCGATGTGCGGCCGCAGTGAGGAAGCATTGGCTGTGATCAATCGGATCAAGAGTTTGGGATTAACTCCGAATGTGGTGTCCTGGACTGCTATGATATCAGGCTGTTGTCAAAATGAGAACTACATGGATGCCCTACAGTTTTTCATCCAAATGCAAGAAGAAAATGTAAAACCTAACTCTACTACCATTTGCACCCTTCTCCGGGCATGTGCGGGCCCATCACTGTTAAAGAAAGGTGAAGAGATACACTGCTTCAGCATGAGACATGGGTTTGTGGATGACATATATATAGCCACTGCCCTCATTGACATGTATAGTAAGGGAGGAAAACTAAAAGTAGCCCATGAGGTTTTCAGGAATATTAAGGAGAAAACACTACCTTGTTGGAATTGCATGATGATGGGATATGCTATTTATGGCCATGGGGAAGAGGTATTTACTCTATTCGACAACATGCGCAAAACTGATATCAGACCTGATGCTATAACCTTCACAGCTCTTCTATCTGGCTGCAAGAATGCAGGCTTAGTTATGGAAGGGTGGAAGTACTTCGACAGCATGAAGACAGATTACAATATTAGTCCAACAATTGAGCACTACTCTTGCATGGTAGATCTTCTTGGAAAAGCTGGTTTTCTTGATGAAGCTTTGGATTTCATCCACGCCATGCCACAAAAGGCAGATGCTAGTATTTGGGGTGCAGTTCTTGCAGCCTGCAGACTTCACAAAGACATTAAGATAGCAGAGATTGCAGCAAGGAATCTTTTCAGGTTGGAACCATATAATTCTGCTAACTATGTGTTGATGATGAACATATATTCCACTTTTGACAGATGGGGGGACATGGAGCGCCTTAAAGAGTCAATGACTGCCATGGGGGTGAAAATCCCAAATGTCTGGAGTTGGACACAAGTTAACCGGACTATTCATGTGTTCTCCACGGAAGGGAAATCACATCCTGAAGAAGGAGAAATATATTTTGAGTTGTATCAATTAATCTCTGAGATAAAAAAGCTGGGGTATGCACCCGATATTAATTGTGTACATCAGAACATTGATGACAGTGAGAAGGAGAAGGTTCTGCTCAGTCACACAGAGAAGTTGGCTATGACATATGGACTGATGAAAATTAAAGGTGGAACACCAATCAGGGTAGTGAAGAACACAAGAATTTGTCAAGACTGTCACACAGCAGCAAAGTACATTTCCTTGGCTCGAAACCGCGAGATTTTCCTCAGAGATGGTGGCCGTTTTCACCATTTCATGAATGGAGAATGCTCCTGTAAAGATCGTTGGTAG 2838 0.4116 MTFCISFQYHSFMDNLVAPFHHLNPYFVQNPQPHMPPRSHSPSSVSLGMSETQLVSSPQFSSPKFSPLFHPLGEIRTLDSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHNKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKCLGIERTNQVFDETPLQEDFLWNTIVMANLRSERWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAAFDSIEDHNLASWNSIIASYAVNGCVNGAWDIFQEMESSGIKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIELGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFNNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMCGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFIQMQEENVKPNSTTICTLLRACAGPSLLKKGEEIHCFSMRHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMRKTDIRPDAITFTALLSGCKNAGLVMEGWKYFDSMKTDYNISPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFDRWGDMERLKESMTAMGVKIPNVWSWTQVNRTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYAPDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCKDRW 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00671 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Pumo7g00671 945 Pfam PPR repeat 233 259 IPR002885 -
Pumo7g00671 945 Pfam PPR repeat 712 738 IPR002885 -
Pumo7g00671 945 Pfam PPR repeat 612 637 IPR002885 -
Pumo7g00671 945 Pfam PPR repeat family 331 376 IPR002885 -
Pumo7g00671 945 Pfam PPR repeat family 536 584 IPR002885 -
Pumo7g00671 945 Pfam PPR repeat family 641 684 IPR002885 -
Pumo7g00671 945 Pfam PPR repeat family 466 505 IPR002885 -
Pumo7g00671 945 FunFam Pentatricopeptide repeat-containing protein At1g20230 299 421 - -
Pumo7g00671 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Pumo7g00671 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Pumo7g00671 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Pumo7g00671 945 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 370 882 IPR046960 GO:0003723|GO:0009451
Pumo7g00671 945 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 81 228 - -
Pumo7g00671 945 Pfam E motif 755 811 IPR046848 -
Pumo7g00671 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Pumo7g00671 945 NCBIfam pentatricopeptide repeat 675 709 IPR002885 -
Pumo7g00671 945 NCBIfam pentatricopeptide repeat 470 502 IPR002885 -
Pumo7g00671 945 NCBIfam pentatricopeptide repeat 539 572 IPR002885 -
Pumo7g00671 945 NCBIfam pentatricopeptide repeat 641 674 IPR002885 -
Pumo7g00671 945 NCBIfam pentatricopeptide repeat 334 367 IPR002885 -
Pumo7g00671 945 NCBIfam pentatricopeptide repeat 504 538 IPR002885 -
Pumo7g00671 945 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 609 835 - -
Pumo7g00671 945 Gene3D Tetratricopeptide repeat domain 140 288 IPR011990 GO:0005515
Pumo7g00671 945 Gene3D Tetratricopeptide repeat domain 470 592 IPR011990 GO:0005515
Pumo7g00671 945 Gene3D Tetratricopeptide repeat domain 689 771 IPR011990 GO:0005515
Pumo7g00671 945 Gene3D Tetratricopeptide repeat domain 289 419 IPR011990 GO:0005515
Pumo7g00671 945 Gene3D Tetratricopeptide repeat domain 593 688 IPR011990 GO:0005515
Pumo7g00671 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Pumo7g00671 945 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 496 596 - -
Pumo7g00671 945 Pfam DYW family of nucleic acid deaminases 853 945 IPR032867 GO:0008270
Pumo7g00671 945 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00671 Pumo-Chr7 11109664 11113170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00671 143 945 Glycoside Hydrolase AT3G49170 29.074 1.20e-125 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00671 - - gmx:100796795 1815.05