Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00543 ATGGCGGAGAAATCATGCATTAAGCGCCTTCAGAAGGAATATAGAGCCCTTTGTAAAGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTCGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTTTCATCCAGAAAGTTGGAATCCCATGTGGTCAGTATCAAGCATATTAACAGGGCTTCTTTCGTTCATGATGGACAACAGTCCAACAACTGGCAGTGTAAACACCACCACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAATGCAACATTCAGGAAGATGTTCCCCGAGTATGTGGAGAAGTACAACCAGCAACAGCTTTCTGAGCAGGCTGCTCCAGAGAGGGTCTCATCAGATACGTCTCCCGACAAGAGTTCAAGGCCAGTTTTGGAAAAGAAATTAGAATCCAATGGAGAAGACATGAGAAGAGTAGATGGGTTGAAGGAAGTGAGGAAAAACAGAAAACCATTTCCAACGTGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCGTTACCTCTGCTTCAGCTGTGA 717 0.4365 MAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQLSEQAAPERVSSDTSPDKSSRPVLEKKLESNGEDMRRVDGLKEVRKNRKPFPTWMMLLLFSIFGVVMALPLLQL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00543 238 SUPERFAMILY UBC-like 5 157 IPR016135 -
Pumo7g00543 238 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Pumo7g00543 238 MobiDBLite consensus disorder prediction 164 195 - -
Pumo7g00543 238 Pfam Ubiquitin-conjugating enzyme 9 132 IPR000608 -
Pumo7g00543 238 Gene3D Ubiquitin Conjugating Enzyme 1 177 IPR016135 -
Pumo7g00543 238 SMART ubc_7 8 162 - -
Pumo7g00543 238 CDD UBCc 7 157 IPR000608 -
Pumo7g00543 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7 145 - -
Pumo7g00543 238 MobiDBLite consensus disorder prediction 164 182 - -
Pumo7g00543 238 FunFam Ubiquitin-conjugating enzyme E2 34 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00543 Pumo-Chr7 8507512 8512315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00543 1 238 Miscellaneous Gene Families AT1G17280 78.750 7.69e-137 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00543 K04554 - gmx:100778181 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00543 7 8507512 8512315 Pumo7g00543 7 8507512 8512315 ECH