Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00481 ATGTTCCTCAGCTGGATGCAAAATAAACTTGGTGGAAAACAAGACAGCAGAAAACCAAATACACATACAACTACTACATATCATGCAAAACAAGAGCCTAGAGAAGAATTCAGCGATTGGCCTCATGGTTTACTAGCAATTGGAACATTTGGAAATAAGAGTGAAATCAAAGAAAACTTAGATGACCAAAATACACAAGAGGATCCATCTTCACCAGAGGAAATAGCAGACTTCACTCCTGAAGAAATTGGGAATCTACAGAAGGAGTTAACTAAACTCCTGAGACGAAAACCCAATGTGGAAAAGGAAATTTCTGAGCTTCCTCTGGACAGATTCCTTAACTGCCCTTCAAGCTTGGAGGTTGATAGGAGAATCAGTAATGCGCTATGCAGTGAATCAGAAGATAAGGAAGAAGATATTGAGAAGACACTGAGTGTGATAATTGATAAATGCAAAGACATTTGTGCAGATAAAAGAAAGAAAGCAATTGGGAAGAAATCTATTTCTTTCCTTCTGAAGAAGATATTTGTTTGTAGAAGTGGATTTGCTCCAACACCTACCCTTAGAGATACCCTTCAAGAGTCAAGAATGGAGAAGCTTTTGAGGACAATGCTTCACAAGAAAATTTACACCCAAAATTCTTCTCGGGCATCGTTGGTGAAGAAGTCCATAGAGGACAAGAAGATGACAAGGAAGAGGAATGAGGATGAATCAGATGAGAGAAACGGTGATGGCTGTAAATGGGTCAAGACTGATTCTGAATGCCCTGAGGATATTTACCTTTCTACTTCACTTGCCAGCTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCTTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATCCCTTTAGGTCTCTATGTGATCCGTGGGGAAAATGTTGTTCTAATTGGTGAACTGGACTTGGAGAGGGAGGAACTTCCCGAACATATGACACGTGTTTCTACCGCAGAAATCAAGAGGGCACAGAAAGCAGAAAGGGAGGCTTCAGATCTGAAAGGGACTATGAGGAAAAGAATGGAATTCCTTGACTTTGACTAG 1137 0.4055 MFLSWMQNKLGGKQDSRKPNTHTTTTYHAKQEPREEFSDWPHGLLAIGTFGNKSEIKENLDDQNTQEDPSSPEEIADFTPEEIGNLQKELTKLLRRKPNVEKEISELPLDRFLNCPSSLEVDRRISNALCSESEDKEEDIEKTLSVIIDKCKDICADKRKKAIGKKSISFLLKKIFVCRSGFAPTPTLRDTLQESRMEKLLRTMLHKKIYTQNSSRASLVKKSIEDKKMTRKRNEDESDERNGDGCKWVKTDSECPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00481 378 Coils Coil 83 103 - -
Pumo7g00481 378 FunFam U6 snRNA-associated Sm-like protein LSm1 262 375 - -
Pumo7g00481 378 CDD LSm1 262 332 IPR034104 GO:0000956
Pumo7g00481 378 Gene3D - 262 375 - -
Pumo7g00481 378 SMART Sm3 263 331 IPR001163 -
Pumo7g00481 378 MobiDBLite consensus disorder prediction 1 81 - -
Pumo7g00481 378 ProSiteProfiles Sm domain profile. 260 335 IPR047575 GO:0003723
Pumo7g00481 378 PANTHER OS03G0406300 PROTEIN 2 255 IPR044683 GO:0009630|GO:0040008
Pumo7g00481 378 Pfam LSM domain 264 330 IPR001163 -
Pumo7g00481 378 MobiDBLite consensus disorder prediction 9 27 - -
Pumo7g00481 378 SUPERFAMILY Sm-like ribonucleoproteins 263 333 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00481 Pumo-Chr7 7718471 7727551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00481 - - gsj:114417729 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00481 7 7718471 7727551 Pumo7g00481 7 7718471 7727551 ECH