Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00405 ATGGCATCCCATTTACTCAATCACTCCTCAAAGATGAGAAATGCTTCCAAGTTGCTGCAGCATGAGCGTGCTCTTTTGGTTCGTTGGTTTTCCGGCGATGCTCAATCCTCTCTCAACCGGAATCGCGATATGTGGAAATCTCCATTCCATGAATCTTCAACAAGAAGCAGTGTCTTTGAACCGGCCTCCAGCTTTACTAACCGTTCATTTGGTATACAGAAGAGAAATATCTCCATGGCTACCATTAAAAGGGGTTCCGTTATTGGGTCTGGGTTCAATGGAGAGATTTCACGAAGTTCGCAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCCGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCCACTGTTGAAATGGAATGTATGGAGGAAGGTTATCTGGCCAAGATAATCTGTGGGGATGGGCAAAAAGAAATTAAAGTTGGTGAGATAATCGCCATAACTGTTGAAGATGAGGGGGATATTGCGAAGTTTAAAGATTACCAACCTTCAGCATCTGAACCAAGTGCACCCCCTGCCAAAGAAACATCTGCCCCACCCCCACCAAAGAAAGAGGTGGTAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGCTTCCAAACCCAGTGCACCACCTTCATCTGGAGATCGCATATTTGCTAGTCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCTATCTCTAGCATTAAAGGAACAGGACCTGAAGGGCTCATTGTCAAGGCTGACATTGATGATTTCTTAGCTTCTGGTGCTAAAGAAGCTTCGGCACCCTCAAAGGCCAAGGTTGCAACAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGGTCACAGCTTCAAGGCTATTATTATCAAAACAATCTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCATGAGTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATATCGGTTAACGATCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAATGGGCTCTTTGTTCCAGTCATCAGGGATGCAGACAAGAAGGGCCTCTCTATGATAGGGGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGTACATTTACAGTGTCTAACCTGGGAGGTCCATTTGGTGTCAAACAATTCTGTGCAATCATCAATCCTCCTCAGTCGGGCATTCTTGCAGTTGGATCTGCTGAGAGGAGGGTCATTCCGGGATCAGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGGTGCAATTGGTGCCGAATGGTTAAAAGCATTCAAAGGCTATATTGAAAATCCAGAATCCATGTTGTTGTAA 1641 0.4461 MASHLLNHSSKMRNASKLLQHERALLVRWFSGDAQSSLNRNRDMWKSPFHESSTRSSVFEPASSFTNRSFGIQKRNISMATIKRGSVIGSGFNGEISRSSQVLSRRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKISPGEVLCEVETDKATVEMECMEEGYLAKIICGDGQKEIKVGEIIAITVEDEGDIAKFKDYQPSASEPSAPPAKETSAPPPPKKEVVEEPAREPEPKASKPSAPPSSGDRIFASPLARKLAEEKNVPISSIKGTGPEGLIVKADIDDFLASGAKEASAPSKAKVATDAALDYTDIPVSQIRKVTASRLLLSKQSIPHYYLTVDTCVDKLMSLRTQLNSLQEASGGSRISVNDLVIKAAALALRKVPQCNSSWANDYIRQYNNVNINVAVQTDNGLFVPVIRDADKKGLSMIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAERRVIPGSGAEEFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00405 546 Gene3D - 112 218 - -
Pumo7g00405 546 MobiDBLite consensus disorder prediction 205 255 - -
Pumo7g00405 546 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 113 217 - -
Pumo7g00405 546 NCBIfam pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 119 546 IPR006257 GO:0004742|GO:0006090|GO:0045254
Pumo7g00405 546 Pfam Biotin-requiring enzyme 119 191 IPR000089 -
Pumo7g00405 546 ProSiteProfiles Biotinyl/lipoyl domain profile. 117 193 IPR000089 -
Pumo7g00405 546 SUPERFAMILY CoA-dependent acyltransferases 315 546 - -
Pumo7g00405 546 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 315 546 IPR001078 GO:0016746
Pumo7g00405 546 SUPERFAMILY Single hybrid motif 116 211 IPR011053 -
Pumo7g00405 546 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 142 171 IPR003016 -
Pumo7g00405 546 Pfam e3 binding domain 255 289 IPR004167 GO:0016746
Pumo7g00405 546 MobiDBLite consensus disorder prediction 225 240 - -
Pumo7g00405 546 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 249 294 IPR036625 GO:0016746
Pumo7g00405 546 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 256 293 IPR004167 GO:0016746
Pumo7g00405 546 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 301 544 - -
Pumo7g00405 546 CDD lipoyl_domain 118 191 - -
Pumo7g00405 546 Gene3D - 298 544 IPR023213 -
Pumo7g00405 546 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 90 546 IPR045257 GO:0006086|GO:0045254
Pumo7g00405 546 Gene3D - 244 297 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00405 Pumo-Chr7 5998864 6007676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00405 2 546 Acyl Lipid Metabolism Gene Families AT1G54220 67.636 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00405 K00627 - gmx:100804938 941.799