Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00396 ATGTACTCAGGGGTGAAAGCTTTGGTACACAGACGCCGGAAGCTGATTAGTGCTACCAAGGCTGATGAAAATGGAAATGGGCTAATCGGAAAGAAGACCTATTTGGAAGGTATTATTATGTCGATACCAACTTTGGGAGCTGGCCAATCTGCGTTCAATATTCATTTTGAATGGGACGGCGACATGGGAATTCCTGGAGCATTTTTAATAAAAAATAAAATGCAAGTTGAGTTCTTTCTCGTGAGTTTGACTCTTGAAGATATTCCTAATCAAGGAACAGTGCACTTTGTTTGCAACTCGTGGGTTTACAATTATAAGAAATACGAAAAGGATCGAATTTTCTTTGCCAACGAGTCATATGTTCCAAGTGAAACACCAGGTCCACTAGTGACATACAGAGAAGCAGAACTGCAAAGTTTAAGAGGGAATGGAACTGGGGAGCGCAAGGAATGGGACAGAGTTTATGATTATGATGTTTACAATGATTTGGGCAATCCTGACAGTTGTGAAAACTTTGCTCGCCCAGTTCTTGGAGGATCTATCACTCATCCCTACCCTTGTAGGGGAAGAACCGATTTCAACAGTGAGAAACCGGGAGATCAGGTTTATGTTCCAAGAGATGAAAAATTTAGTCACTTGAAGGCAAATGACTTTCTTACTTACCAGATGAAATCTTTCTCTCGAACCTTCTTGCCTAGACTCAAACCTGTACTTCATTGCACACAGAATGAGTTTAATAGCTTTGAAGAAGTATGTGCACTCTGTGAAGGTGGAATTAAGCTGCCTACAGATGAACTTAGCAAAAATATATCCTCACCTTTGCTCAAGGAAATCTTCCGCACTGATGGTGAAAGTGTCTTCAAGTTTTCAGTACCTCATTTAATTAAAGTTAGTAAATCTGCATGGATGACGGATGAAGAATTTGCAAGAGAGATGATTGCTGGTGTAAACCCTTGCGTGATTCATCTTCTACAAGAGTTCCCACCACAAAGCAAGTTGGATCCCTCAGTCTATGGTGATCAAACAAGTAAAATAACTGAAGACCACTTGGAGATTAACCTTGAAGGGCTCACAGTAGTTAAGGCAATTAAGGGTCAGAGATTATTCATATTAGATCACCATGACGTATTTATGTCGCTTTTGAGAAGGATAAACGAATCTAAATCAACAAAGGCTTATGCAACCAGGACAATCCTTTTCTTGAAAGATGATGGGACCTTAAAGCCATTGGCCATTGAATTAAGTTTGCCACATCCAAGTGGAGATAAGTTGGGTGCTGTGAGTAAAGTGGTGTTGCCTGCAGCCGAAGGTGTTGACAGTACAATTTGGCTATTGGCCAAGGCTTATGTCGTTGTGAATGATTCGTGCCATCATCAGCTCATAAGCCACTGGTTGAATACTCATGCTGTGATTGAGCCGTTTGTCATATCAACAAACAGGAATTTGAGTGTTCTTCACCCTATTTATAAACTTCTATTTCCTCACTATCGTGACACAATGAATATCAATGCACTTGCTCGACAATCACTTGTTAATGCTGATGGCTTTATAGAGCAAACCTTTTTGGGTGGAAGGTATGCTGTGGAGATGTCTTCGGCAGCTTACAAAAATTGGGTGTTTCCTGACCAAGCATTACCTGCTGATCTCATCAAGAGAGGATTGGCTATCGAGGATTCATCTTGTCCCAATGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTAGAGATATGGAATGCTATCAAGACATGGGTCCATGACTATGTCTCCTTGTACTATGCCACAGATGATGCTATTAAAAAAGACCATGAACTCCAAGCATGGTGGAAAGAAGTTGTTGAGAAGGGTCATGCTGACTTAAAGGATCAGCCATGGTGGCCAAAATTACATACTCGTGAAGAGTTGATTCAATCCTGTAGTACCATTGTATGGATTGCTTCAGCTCTTCATGCAGCAGTTAATTTTGGACAATATCCTTATGGTGGTTTTATCCTCAATCGACCAACTCTTAGCAGAAGATTGATCCCAGAAAAAGGAACTCCAGAATATGATGAGATGGTGAAGAATCCTCAAAAGGCTTATTTGAGAACAATCACGCCAAAGTTTCAGGCTCTTGTTGACCTTTCAGTGATAGAGATATTGTCAAGACATGCTTCTGATGAGGTCTACCTTGGACAGAGGGACAATCCAAATTGGACCTCTAATCCAAAGGCAATAGAAGCCTTCAAAAAGTTTGGAAAAAAGCTAGCGGATATTGAGACAAAAATCTCAGAAAGAAACCATGATCCAAATCTTAGAAATCGAACCGGGCCAGCTCAATTGCCCTATACTGTGCTTCTTCCAACTAGTGAAACAGGGTTGACTTTTAGAGGAATTCCCAACAGCATCTCTATCTAA 2409 0.4089 MYSGVKALVHRRRKLISATKADENGNGLIGKKTYLEGIIMSIPTLGAGQSAFNIHFEWDGDMGIPGAFLIKNKMQVEFFLVSLTLEDIPNQGTVHFVCNSWVYNYKKYEKDRIFFANESYVPSETPGPLVTYREAELQSLRGNGTGERKEWDRVYDYDVYNDLGNPDSCENFARPVLGGSITHPYPCRGRTDFNSEKPGDQVYVPRDEKFSHLKANDFLTYQMKSFSRTFLPRLKPVLHCTQNEFNSFEEVCALCEGGIKLPTDELSKNISSPLLKEIFRTDGESVFKFSVPHLIKVSKSAWMTDEEFAREMIAGVNPCVIHLLQEFPPQSKLDPSVYGDQTSKITEDHLEINLEGLTVVKAIKGQRLFILDHHDVFMSLLRRINESKSTKAYATRTILFLKDDGTLKPLAIELSLPHPSGDKLGAVSKVVLPAAEGVDSTIWLLAKAYVVVNDSCHHQLISHWLNTHAVIEPFVISTNRNLSVLHPIYKLLFPHYRDTMNINALARQSLVNADGFIEQTFLGGRYAVEMSSAAYKNWVFPDQALPADLIKRGLAIEDSSCPNGLRLVIEDYPYAVDGLEIWNAIKTWVHDYVSLYYATDDAIKKDHELQAWWKEVVEKGHADLKDQPWWPKLHTREELIQSCSTIVWIASALHAAVNFGQYPYGGFILNRPTLSRRLIPEKGTPEYDEMVKNPQKAYLRTITPKFQALVDLSVIEILSRHASDEVYLGQRDNPNWTSNPKAIEAFKKFGKKLADIETKISERNHDPNLRNRTGPAQLPYTVLLPTSETGLTFRGIPNSISI 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00396 802 ProSiteProfiles PLAT domain profile. 1 116 IPR001024 GO:0005515
Pumo7g00396 802 Gene3D - 301 435 - -
Pumo7g00396 802 Pfam Lipoxygenase 129 785 IPR013819 GO:0016702|GO:0046872
Pumo7g00396 802 Gene3D PLAT/LH2 domain 10 120 - -
Pumo7g00396 802 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 119 802 IPR013819 GO:0016702|GO:0046872
Pumo7g00396 802 Pfam PLAT/LH2 domain 30 115 IPR001024 GO:0005515
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 287 303 IPR001246 GO:0016491
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 151 167 IPR001246 GO:0016491
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 326 345 IPR001246 GO:0016491
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 715 729 IPR001246 GO:0016491
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 86 104 IPR001246 GO:0016491
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 112 133 IPR001246 GO:0016491
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 393 417 IPR001246 GO:0016491
Pumo7g00396 802 PRINTS Plant lipoxygenase signature 242 263 IPR001246 GO:0016491
Pumo7g00396 802 PANTHER LIPOXYGENASE 14 802 IPR000907 GO:0016702|GO:0034440|GO:0046872
Pumo7g00396 802 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 14 120 IPR036392 GO:0005515
Pumo7g00396 802 Gene3D - 436 801 - -
Pumo7g00396 802 Gene3D - 121 213 - -
Pumo7g00396 802 FunFam Lipoxygenase 437 801 - -
Pumo7g00396 802 ProSitePatterns Lipoxygenases iron-binding region signature 1. 458 472 IPR020833 GO:0016702|GO:0046872
Pumo7g00396 802 Gene3D - 214 300 IPR027433 -
Pumo7g00396 802 SUPERFAMILY Lipoxigenase 122 802 IPR036226 -
Pumo7g00396 802 PRINTS Lipoxygenase signature 458 475 IPR013819 GO:0016702|GO:0046872
Pumo7g00396 802 PRINTS Lipoxygenase signature 478 498 IPR013819 GO:0016702|GO:0046872
Pumo7g00396 802 PRINTS Lipoxygenase signature 440 457 IPR013819 GO:0016702|GO:0046872
Pumo7g00396 802 FunFam Lipoxygenase 301 435 - -
Pumo7g00396 802 ProSitePatterns Lipoxygenases iron-binding region signature 2. 485 495 IPR020834 GO:0016702|GO:0046872
Pumo7g00396 802 SMART LH2_4 3 117 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00396 Pumo-Chr7 5737727 5824259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00396 14 802 Acyl Lipid Metabolism Gene Families AT1G55020 58.540 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00396 K15718 - gmx:547694 1407.51