Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00330 ATGGCTCAGCCGCCGTTCGATCCGTACTACCTGTACCAGCAAGATGAGCGGAGCAACATCAACACGCTATTTGTGTCCGGTCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCCTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTAGCGTTTGCCACATTTTTCAACCACCAATCGGCAATGGCAGCGTTGCACGCGTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTCTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGTAAACCAGGTGGTGGAGCCTATGTGGTTATAGATAAAAGGTCCAAAGGGGAGCCCGATCTTCAGGGATCATCAAGTGATGATGGTGACAGTGACCCTGATGAACCATCAGACAGTGGCGGCAACCAGGGTGATTTAGCAACCATGACAAGTGATGAAACGGCTGTTGGTTCTGACAATGCTGTATCTGTGATGAAATTTTGTGTAGTTTGTACAAGGTGTTGCTTCCTTTTCCCATTCAGAACTTCTGTATGTACTACAATCCTTTCAAATTGGCTGCAGGAGCAACATGGAACAGGCAGTGCCAGAGGACTGTGTTCCACCCTCTTTATCGCAAATCTTGGTCCAAATTGCACTGCAGATGAATTGAAGCAGGCTTTTTCTGTATATACTGGATTCAACATGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAAATGACCAAGCTGCTAAAGTCATGGAGGAGCTTCAGGGAAGCTTGCTGCCATCATCAGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAAAATGAGGAAGCGTTAG 885 0.4847 MAQPPFDPYYLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGEPDLQGSSSDDGDSDPDEPSDSGGNQGDLATMTSDETAVGSDNAVSVMKFCVVCTRCCFLFPFRTSVCTTILSNWLQEQHGTGSARGLCSTLFIANLGPNCTADELKQAFSVYTGFNMVKMRSRGGMPVAFADFEENDQAAKVMEELQGSLLPSSDRGGMHIEYARSKMRKR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00330 294 MobiDBLite consensus disorder prediction 101 154 - -
Pumo7g00330 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Pumo7g00330 294 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 150 290 - -
Pumo7g00330 294 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
Pumo7g00330 294 SUPERFAMILY RNA-binding domain, RBD 21 274 IPR035979 GO:0003676
Pumo7g00330 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 275 IPR000504 GO:0003723
Pumo7g00330 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Pumo7g00330 294 Gene3D - 210 294 IPR012677 -
Pumo7g00330 294 SMART rrm1_1 213 285 IPR000504 GO:0003723
Pumo7g00330 294 SMART rrm1_1 22 93 IPR000504 GO:0003723
Pumo7g00330 294 Gene3D - 16 103 IPR012677 -
Pumo7g00330 294 FunFam RNA-binding protein with multiple splicing 204 294 - -
Pumo7g00330 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00330 Pumo-Chr7 4352504 4360590 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00330 - - gmx:100783764 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00330 7 4352504 4360590 Pumo7g00330 7 4352504 4360590 ECH