Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00319 ATGTGTAAGTTTCCTAATTATTTACCCAATTTTATTTTTACAGTGGATATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGCGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATCATCGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCACGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGTCAAACAGCCAATGGTGCTTTGTTCCTTCTATCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAGTTTCTGACATGAATGTTGATCCCAAAGCAATGGGAAATGGCTCTATTGCGAGTTCAAGTAATTCCAGTAGCTCTAGATCATATCTTGCAAATGGAGTATCTCCAGATGGACCATACAATTATTTAAGCAATGATTTCTCATTTCCACCAGGAGGCATACCTTCACTAAGATTACCATTGGTAGTAACCAGCCATGAGAACAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAAGCCCCTGGTTCCAGATCATTTTTCACAGAGATTATTGCTTCAATCTCAGACATAAAATTTGGGAAGGATGGAAGATATATACTTAGTCGTGATTATATGACCTTAAAGTTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCAAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGACAAGTTTGAGTGCTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACCGAGGCTACAACCTTGGAAGCCAGTAAAAATCCAATGAGACGCCAAGTTCCAACCCCTTCAAGGCCATCTAGATCGCTCGGAAACAGTATAACAAGAGTTGTAAGACGTGGAGCAGAAAGCGCCGGTGTCGATGCAAATGGGAATTCTTTTGATTTCACCACAAAGTTGCTGCACTTAGCGTGGCACCCAACTGAGAATTCAATTGCCTGTGCTGCTGCAAATAGCTTATACATGTACTATGCTTGA 1479 0.3901 MCKFPNYLPNFIFTVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHRGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKVKKVSDMNVDPKAMGNGSIASSSNSSSSRSYLANGVSPDGPYNYLSNDFSFPPGGIPSLRLPLVVTSHENSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCVPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAESAGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00319 492 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 82 96 IPR018067 -
Pumo7g00319 492 MobiDBLite consensus disorder prediction 135 159 - -
Pumo7g00319 492 Pfam WD domain, G-beta repeat 203 239 IPR001680 GO:0005515
Pumo7g00319 492 MobiDBLite consensus disorder prediction 142 159 - -
Pumo7g00319 492 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 209 223 IPR018067 -
Pumo7g00319 492 SUPERFAMILY WD40 repeat-like 15 484 IPR036322 GO:0005515
Pumo7g00319 492 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 492 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 SMART WD40_4 250 290 IPR001680 GO:0005515
Pumo7g00319 492 SMART WD40_4 82 122 IPR001680 GO:0005515
Pumo7g00319 492 SMART WD40_4 200 239 IPR001680 GO:0005515
Pumo7g00319 492 SMART WD40_4 309 347 IPR001680 GO:0005515
Pumo7g00319 492 SMART WD40_4 8 43 IPR001680 GO:0005515
Pumo7g00319 492 PIRSF PPA2_B55 6 492 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 13 173 - -
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 378 404 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 352 377 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 461 490 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 69 97 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 211 238 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 324 351 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 22 42 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 98 126 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 239 266 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 267 295 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 296 323 IPR000009 GO:0000159|GO:0019888
Pumo7g00319 492 Gene3D - 184 490 IPR015943 GO:0005515
Pumo7g00319 492 Gene3D - 15 180 IPR015943 GO:0005515
Pumo7g00319 492 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 185 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00319 Pumo-Chr7 4189989 4196123 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00319 K04354 - gmx:100786941 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00319 7 4189989 4196123 Pumo7g00319 7 4189989 4196123 ECH