Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00313 ATGATTACAGTAAGCGTAAAATGGCAAAAGGAGATTTTCAAAGATGTAGAAATTGACACTACCCAGTCTCCTTATGTTTTTAAATGCCAATTGTATGATTTGACTGGTGTGCCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGGATGATGCCAATTGGTCAACATTAGGAGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTATTGAAGTCTCCGGAGAAAGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTCATCTTGGGAGATGGATGAGAAGCCTGAGCATGTCAAACACTGCATGGTCTATACTTTTGAACTTTGATGGACATACTGCTGGTCTTTTCAACTTGGGAAATACATGTTATATGAACTCAACATTGCAATGCCTCCATTCTGTCCCCGAGTTAAAGTCAGCTTTGACTAATTACTCACATTCAGGACGAAACAATGATGTTGATCAGTCTTCTCATATGTTGACCATTGCAACCCGTGACTTATTCAGTGAGCTTGATAAGAGTATCAAGCCTGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGTGAAAATCCCGATGCTGTGAAGGCCCTCTTTGGCATAGAACTCATTAGCAGGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGCTAAAACATGGGTTAAAATCCGAGTTAGAAAAGGCTTCGTCTGCATTGGGCCGTAGTGCTACGTACTTGAAGGAATCACGCATCAATGCCCTGCCAAGGTACTTGACTGTTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGAAAGTGGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCAGACGAACTTCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGAGATGAGGAAGGCAAAAAACTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTTCAGAAGGAAAATGATGTAAAAATGTCCGATGCTGAGGGATCATCGAATGGGGGAGGGGAGCCATCTGTAGTTCCCATGGAGGAAGGTGAAAAGGAAACACAGATGACTGGAATTTATGATCTGGTTGCTGTATTAACCCACAAGGGTAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAGACCAAAAGTAGAAGACGACATCACTAGACTATCTGGAGGAGGTGATTGGCACATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAA 1512 0.4167 MITVSVKWQKEIFKDVEIDTTQSPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDANWSTLGVKEGQKLMMMGTADEVLKSPEKGTVFVEDLPEEEQVVAVHLGRWMRSLSMSNTAWSILLNFDGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALTNYSHSGRNNDVDQSSHMLTIATRDLFSELDKSIKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENPDAVKALFGIELISRIHCQESNEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASSALGRSATYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELRKKLEAPRQILRDEEGKKLGLKVNEKSSVQKENDVKMSDAEGSSNGGGEPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPRPKVEDDITRLSGGGDWHMAYIIMYKARVVSV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00313 503 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 434 452 IPR018200 GO:0004843|GO:0006511
Pumo7g00313 503 Gene3D Cysteine proteinases 123 502 - -
Pumo7g00313 503 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 127 499 IPR028889 -
Pumo7g00313 503 Pfam Ubiquitin carboxyl-terminal hydrolase 128 496 IPR001394 GO:0004843|GO:0016579
Pumo7g00313 503 CDD Ubl_USP14_like 1 75 - -
Pumo7g00313 503 SUPERFAMILY Cysteine proteinases 125 497 IPR038765 -
Pumo7g00313 503 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Pumo7g00313 503 FunFam Ubiquitin carboxyl-terminal hydrolase 14 1 73 - -
Pumo7g00313 503 MobiDBLite consensus disorder prediction 388 404 - -
Pumo7g00313 503 Pfam Ubiquitin family 2 73 IPR000626 GO:0005515
Pumo7g00313 503 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Pumo7g00313 503 Gene3D - 1 73 - -
Pumo7g00313 503 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 128 143 IPR018200 GO:0004843|GO:0006511
Pumo7g00313 503 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 501 IPR044635 GO:0004843|GO:0016579|GO:0043161
Pumo7g00313 503 CDD Peptidase_C19A 128 497 - -
Pumo7g00313 503 MobiDBLite consensus disorder prediction 388 425 - -
Pumo7g00313 503 SMART ubq_7 2 73 IPR000626 GO:0005515
Pumo7g00313 503 FunFam Ubiquitin carboxyl-terminal hydrolase 14 122 503 - -
Pumo7g00313 503 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00313 Pumo-Chr7 4067125 4075569 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00313 K11843 - gmx:100802120 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00313 7 4067125 4075569 Pumo7g00313 7 4067125 4075569 ECH