Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00292 ATGGATTCAACTAGTGAAGCACTTTCAATTTCAAATGACGAAACTGAGGCTATTGAAGTCAGGTGGTGCATGTGGAAGGACATATTGATGACCATTGGTGTTGATCCACGTGATGTGGATTTGATTATGGAGTTCATGCCTATGCATTATGAAGCAAGAGACATGTCATTGCCTGAGGAAACATTAGATCCTGATCGCATGAGATATGCCTATACTCGCCTGGCAGAGCTTCTTCGACTGATTAAGACTAAGACATGCTTGCAAGTATTGGACGAGCGGAATTCATCAAAGGCTTTGTCCTTGTGCCAAATAGTAATTTCATTTCACCATTCTCCTCAGCAACAACAACACAATGCGAAACATTCACCCTCGTCGATTTTCCACTCTGATCGAACCACCCAACAAAACCCCAACCACGAGGCCATTCATTCTTCCCATACCTCACCGAACCATTCCCGAACCTCGAGGCCAGGATCTGGACTTCATCACCGTCGCTCACCGCCACGTCATCAACTCCCACTGGGACAAGCTCCACCCTTTATCCACCTCCCTCACACCGTTCCGTCTCAAACACCTCCTCCTCACCCTCCAAAACTGACTACGTTTCGTCTCCTCAAACTCTCCAGTTGGGTCCTCAGACACAACCCTTCCTCCCACACCCTCGATTCCCACGCCATCCTCCTCCACACCCTCGCCAAACACCGCCAATTCAAAACCACCCAAACAATCCTCACACAAATCCTCTCTTCACACCCCCCTCACACCCTCTTCGAAGCGTTGTTGCTCTCCTACCGTCTCTGCAACTCTTCCCCTCTCGTCTTCGATGCCCTCTTCAAAACCCTCGCCCACACCAACAAGTTCCGCCTCGCCACTCACACTTATACCCTAATGAAAGAGCACGGCTTTTCCCCCACTGTCGAATCCTGCAACGCGTTTTTAAGTTCTCTGCTTCGCCTTCGCAGAGCAGATATAGCATTGTCGTTTTACCGCGAATTGCGTCGTTCTTGTGTTTCGCCTAATGTGTACACCCTCAACATGGTTATTCGTGCTCATTGCATGTTAGGGGAAGTGCAGAAGGGCTTTGAAATGTTACAGAAAATGATGGACATGGGTTTGAGTCCTAATGTTGTGTCCTTCAATACTTTGATTTCGGGGTATTGTAACAAGGGTCTGTTTGGATTGGCGTTAAAGGTTAAGTCTTTGATGGGGGACAATGGAGTGCAGCCTAATGTGGTAACCTTTAACACTCTAATTAATGGGTTTTGTAAGGAGAGGAAGCTGCATGAGGCTAATAGGGTTTTCAATGAGATGAAGGTTGCCAATGTGCTTCCCAATATTGTGACTTATAATACTTTGTTGAATGGGTATGGTCAGGTTGGGGACAGTGAAATGGGGGGTAGGGTTTATGAGGAGATGGTGAGGAATGGGGTTAAGGCTGATATATTGACTTATAATGCATTGATTTTGGGGTTGTGTAAGGATGGGAAGACAAAGAAAGCTGCAGGGTTTGTTAGGGAGCTTGATAAGGAGAACTTGGTTCCCAATGCAAGTACCTTTTCTGCTCTAATTACTGGGCAGTGTGTGAGGAACAACTCGGAGCGCGCCTTTCTTATTTATAGGAGCATGGTGAGGAGTGGTTGTAGTCCAAATGAGCATACTTTCCAGATGTTGATATCTGCTTTTTGCAAGAATGAGGACTTTCGATGGGGCTGTGCAGGTTTTGAGGGACGTGTTGAGCAGATTGATGAGGCCAGATTGCAGTACGTTGTCTGA 1773 0.4687 MDSTSEALSISNDETEAIEVRWCMWKDILMTIGVDPRDVDLIMEFMPMHYEARDMSLPEETLDPDRMRYAYTRLAELLRLIKTKTCLQVLDERNSSKALSLCQIVISFHHSPQQQQHNAKHSPSSIFHSDRTTQQNPNHEAIHSSHTSPNHSRTSRPGSGLHHRRSPPRHQLPLGQAPPFIHLPHTVPSQTPPPHPPKLTTFRLLKLSSWVLRHNPSSHTLDSHAILLHTLAKHRQFKTTQTILTQILSSHPPHTLFEALLLSYRLCNSSPLVFDALFKTLAHTNKFRLATHTYTLMKEHGFSPTVESCNAFLSSLLRLRRADIALSFYRELRRSCVSPNVYTLNMVIRAHCMLGEVQKGFEMLQKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMGDNGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVLPNIVTYNTLLNGYGQVGDSEMGGRVYEEMVRNGVKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCSPNEHTFQMLISAFCKNEDFRWGCAGFEGRVEQIDEARLQYVV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00292 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Pumo7g00292 590 NCBIfam pentatricopeptide repeat 518 551 IPR002885 -
Pumo7g00292 590 NCBIfam pentatricopeptide repeat 483 516 IPR002885 -
Pumo7g00292 590 NCBIfam pentatricopeptide repeat 377 411 IPR002885 -
Pumo7g00292 590 NCBIfam pentatricopeptide repeat 342 376 IPR002885 -
Pumo7g00292 590 NCBIfam pentatricopeptide repeat 412 445 IPR002885 -
Pumo7g00292 590 NCBIfam pentatricopeptide repeat 447 480 IPR002885 -
Pumo7g00292 590 NCBIfam pentatricopeptide repeat 308 341 IPR002885 -
Pumo7g00292 590 Pfam PPR repeat 370 400 IPR002885 -
Pumo7g00292 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Pumo7g00292 590 MobiDBLite consensus disorder prediction 112 194 - -
Pumo7g00292 590 Gene3D Tetratricopeptide repeat domain 502 574 IPR011990 GO:0005515
Pumo7g00292 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Pumo7g00292 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Pumo7g00292 590 MobiDBLite consensus disorder prediction 112 156 - -
Pumo7g00292 590 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 114 516 - -
Pumo7g00292 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Pumo7g00292 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Pumo7g00292 590 Gene3D Tetratricopeptide repeat domain 391 500 IPR011990 GO:0005515
Pumo7g00292 590 Gene3D Tetratricopeptide repeat domain 255 390 IPR011990 GO:0005515
Pumo7g00292 590 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Pumo7g00292 590 Pfam PPR repeat family 304 352 IPR002885 -
Pumo7g00292 590 Pfam PPR repeat family 409 456 IPR002885 -
Pumo7g00292 590 Pfam PPR repeat family 480 527 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00292 273 568 Glycosyltransferase AT1G05670 29.129 6.23e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00292 - - gmx:100792776 665.225