Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00273 ATGGGGGGCTCTGAAGGGCGGGGAGCATCGTCGAAGCAATACGGTGTCACGAAGCCCATATCAATGGCTGGTCCATCGGTTTCTGATTTGCAAAGGACTCGTCAGTTAGAGAAGTTTCTCGCTGTTTCGGGGCTTTACGAGAGCAAGGAGGAAGCTGCCAAGAGAGAAGAGGTTCTTCACCGACTTGGACTGATAGTGAAAAATTGGGTGAAGCAACTTACCCGCCTAAGGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTGTCATTTTGACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGACTTAGACACTTTATGCATTGGGCCGTCCTATGTAAACCGGGAGGAGGATTTTTTCTACGCATTGCATGATATCCTAGCTAACATGGAGGAAGTCACAGAATTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTTTATGCCAGTATTTCTCACTTGATTGTACCTGAGGACTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACTGTGCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATGTTGAGCACTTTCGTACAACACTTCGTTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCCAATGTGACAGGTTTCCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTTTATCCAAATGCAGTTCCAAGTATGCTTGTTTCTAGATTCTTTAGGGTATATACACAGTGGCGGTGGCCCACTCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTTGGGTTTCCTGTTTGGCATCCTGGTAAAAATCCTCGTGACAGATCCCATCATATGCCAATCATTACTCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACAAGCACACTTCGTGTAATGATGGAGCAGTTCCAATATGGCAACAAGATCTGTGGGGAAATAGAACTGAATAAAGCTTGTTGGAAGGCTCTGTTTGAATCGTACAGTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGCCGATGACTTGCGCAGTTGGAAAGGTTGGGTGGAATCACGCCTTCGGCAACTGACTTTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAATGTCATCCTTATCATCATGAGTATATGGATACTTCAAGGCAGTGTGCACATTGTGCTTTCTTTATGGGTTTGCAGAGGAAACAGGGAGAGGTTGTTCAAGAAGGTCAGCAATTTGATATACGAGGAACAGTTGAAGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCGGGGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATTCCATGTTATGTATTTCCTGATGGCTATAAACGATCCCGACCATCAAGGCCAACATCACAACTTGAGAATCATAAATCATTTCATAAAGATGAGGTTTCTGGGACTGAACATGTTGAGAGAATCCGTAAGAGGAAGAACAGTGACGGCGTGGATATGAGGGAGGATGCTATACTTAAAAAGCAATCTGCTAGTCCTCCCGAGGATAGATTGGCAAGACGCAGCAGCCTTGGTACCGGTGGTTTGTCTGATAGTCAAGAGTTTAGAAATGTGGAGTGCAATCATTTGTCAAACAGTGGGCAAGAAGAGTTGGATGGAACAGAGTCTCCTGAAGCTGCTTCAAATTCTAGTGTGATTACATCTGTTACAAGTGATGGTGGTTCTTCTGAAGATATTGGATCTGTATCAGTGGCAGGTTGTGTTGAGGATAGCACCAGGGTTGTTGAAATGAACAATGGCAGGTTTGAAGATACTACATATGGCCCACTGGTGAAAAATATAGTGGCAAGTGGAAATGAAGTATTTCAACATGAGCTGCAGGAGCAGTTGCAGCCAAATGCAGTGCTAGGGATGGTTCTTGATTCTGCAGGAAAGGTTCTTTCAGAAGCTGTGCAAGAGCCGGTGATAAGGAGATTGAGTCTAACATCGACAGTGTGA 2100 0.4367 MGGSEGRGASSKQYGVTKPISMAGPSVSDLQRTRQLEKFLAVSGLYESKEEAAKREEVLHRLGLIVKNWVKQLTRLRGYTDQMVEDANAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYALHDILANMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISHLIVPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQFYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFPVWHPGKNPRDRSHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICGEIELNKACWKALFESYSFFESYKNYLQVDVVAADADDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYHHEYMDTSRQCAHCAFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYMFWKPGMEIYVSHVRRRQIPCYVFPDGYKRSRPSRPTSQLENHKSFHKDEVSGTEHVERIRKRKNSDGVDMREDAILKKQSASPPEDRLARRSSLGTGGLSDSQEFRNVECNHLSNSGQEELDGTESPEAASNSSVITSVTSDGGSSEDIGSVSVAGCVEDSTRVVEMNNGRFEDTTYGPLVKNIVASGNEVFQHELQEQLQPNAVLGMVLDSAGKVLSEAVQEPVIRRLSLTSTV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00273 699 CDD NT_PAP_TUTase 54 209 - -
Pumo7g00273 699 MobiDBLite consensus disorder prediction 494 615 - -
Pumo7g00273 699 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Pumo7g00273 699 PANTHER POLY A POLYMERASE 6 530 - -
Pumo7g00273 699 FunFam Nuclear poly(A) polymerase 4 361 477 - -
Pumo7g00273 699 SUPERFAMILY Nucleotidyltransferase 12 208 IPR043519 -
Pumo7g00273 699 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Pumo7g00273 699 Pfam Nucleotidyltransferase domain 88 162 IPR002934 GO:0016779
Pumo7g00273 699 MobiDBLite consensus disorder prediction 559 612 - -
Pumo7g00273 699 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Pumo7g00273 699 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 358 - -
Pumo7g00273 699 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Pumo7g00273 699 Gene3D - 15 357 - -
Pumo7g00273 699 FunFam Putative poly(A) polymerase gamma 187 357 - -
Pumo7g00273 699 Pfam Poly(A) polymerase central domain 15 358 IPR007012 GO:0043631|GO:1990817
Pumo7g00273 699 Pfam Poly(A) polymerase predicted RNA binding domain 361 421 IPR007010 GO:0003723|GO:0043631
Pumo7g00273 699 MobiDBLite consensus disorder prediction 504 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00273 Pumo-Chr7 3231127 3235582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00273 K14376 - gmx:100783237 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00273 7 3231127 3235582 Pumo7g00273 7 3231127 3235582 ECH