Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00197 ATGGAGTTGATTTCGGGTTTACCAGAGGACGTAGCCAGAGACTGTTTAATTCGGGTTTCGTATCAGCAGTTCCCAACGGTGGCGTCGGTGTGCAAACTCTGGAAAAAGCAGATTCACGCGCCGGAGTTCCACCGTCAACGGCGTAGCACGAAGCACGCCCAGAAGGTCATAGCGATGGTTCAAGCACTGGTGGAACCGGGAACCGGTTCGACCAAGCGCGTGACGAACCCGGTTTACAAGCTCAGCGTGTTCGAACCGGAAACGGGTATCTGGAGCGAGATTCCGCCACCACCAGAATTTTGTTCGGGGCTTCCCATGTTCTGTCAGTTAGTGAGTGTCGGGTACGATCTGGTGGTGTTGGGCGGGTTGGACCCGAATTCGTGGAAAGCATCGAATTCGGTGTTTGTCTATAATTTCTTGTCGGCGAAGTGGCGCCGCGGGGCGGACATGCCGGGTGGGCCCCGCACGTTCTTCGCGTGCGCGTCGGATTCCGAGGGGACAGTTTATGTCGCCGGCGGACACGACAACGAGAAGAACGCGCTGCGGTCGGCGCTGGCCTATGACGTTACCTCGGACCGGTGGGTCGTGCTTCCCGACATGGCGGCGGAGCGCGACGAGTGCAAGGGCGTCTTCCGCCGCGGGAGGTTCGTCGCCGTCGGGGGTTACCCGACGGAGACGCAGGGAAGGTTCGTGAAGAGTGCTGAGGCGTTCGATCCCGCCACGTGGCGTTGGAGCGAAGTGAAGGAGGACTTCTTGGATTGCGCCACGTGTCCGAGGACCTTCGTGGACGGTGGCGATGACGAGGGGGTGTTCCTGTGCAGCGGCGGGGACCTGATGGCCCTGCGCGGGGACACGTGGCAGAAGATGGCGACGGTGCCCGGGGAGATACGCAACGTGGCGTACGTTGGGGAGTTTGATGGGACGCTGGTGTTGATCGGATCAAGCGGCTACGGTGAAGTCCACGTGGCTTTTGCGTTCGATGTGAAGAGTTGCAATTGGAGGAAACTGGAGATCCCAGAAGGGTTCAGGGGCCATGTCCAAACCGGTTGTGTTTTGGAGATTTAG 1065 0.5972 MELISGLPEDVARDCLIRVSYQQFPTVASVCKLWKKQIHAPEFHRQRRSTKHAQKVIAMVQALVEPGTGSTKRVTNPVYKLSVFEPETGIWSEIPPPPEFCSGLPMFCQLVSVGYDLVVLGGLDPNSWKASNSVFVYNFLSAKWRRGADMPGGPRTFFACASDSEGTVYVAGGHDNEKNALRSALAYDVTSDRWVVLPDMAAERDECKGVFRRGRFVAVGGYPTETQGRFVKSAEAFDPATWRWSEVKEDFLDCATCPRTFVDGGDDEGVFLCSGGDLMALRGDTWQKMATVPGEIRNVAYVGEFDGTLVLIGSSGYGEVHVAFAFDVKSCNWRKLEIPEGFRGHVQTGCVLEI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00197 354 Gene3D - 63 340 IPR015915 GO:0005515
Pumo7g00197 354 SUPERFAMILY F-box domain 3 56 IPR036047 GO:0005515
Pumo7g00197 354 SMART kelc_smart 116 164 IPR006652 GO:0005515
Pumo7g00197 354 SMART kelc_smart 167 214 IPR006652 GO:0005515
Pumo7g00197 354 Pfam F-box domain 4 45 IPR001810 GO:0005515
Pumo7g00197 354 CDD F-box_AtAFR-like 3 47 - -
Pumo7g00197 354 PANTHER OS02G0208700 PROTEIN 2 354 IPR044595 GO:0080037|GO:2000762
Pumo7g00197 354 SUPERFAMILY Kelch motif 76 338 IPR015915 GO:0005515
Pumo7g00197 354 Pfam Kelch motif 105 155 - -
Pumo7g00197 354 Pfam Kelch motif 165 200 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00197 Pumo-Chr7 2258259 2259918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00197 7 209 Miscellaneous Gene Families AT4G33900 25.221 7.68e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00197 - - gmx:100796602 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00197 7 2258259 2259918 Pumo7g00197 7 2258259 2259918 ECH