Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00178 ATGCGATTGTCTCCTTGTGCGAACACCACTTCAATGGGTTCTCTCGTGTGGTTCCGGAAGGGTCTTCGGATCCACGACAACCCCGCTCTCGAATTCGCTTCACGTGGGGCCTCTCATCTCTACCCTGTCTTCGTCATCGACCCGCATTACATGGAACCCGACCCGAATGCTTCCACACCCGGGTCCTCGCGCGCGGGTCTCAACCGCATCAAGTTCTTGCTCGAGAGCCTCGTTGAACTTGACCTCAACCTCAAGAACCTTGGCTCGCGACTTTTGCTTCTCAAGGGTGACCCAGCTGAAGTTGTCATTCAATGCTTGAAGGAGTGGAATGTCCGGAAGCTATGCTTTGAGTTCGACACTGAACCGTATTATCAGTCTCTGGATGTTAAAGTTAAGAACTTTGCACTTGCTGCTGGAATTGAGGTTTTCTCTGCTGTAAGTCACACACTCTTCAATCCCTCCGATATTATAAAGAAGAATGGAGGGAAGCCACCGCTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAACCGCCATCTCCTCTCTCAACCGTGTACTCTTCACTTCCTCCAGTTGGCCATCTTGGAAATTGTGATATTTCTGAAGTTCCAACAATCAGAGATCTTGGATATGGAGATGCTGAACAGGATGAATTCTCTCCTTTCAAAGGTGGTGAGTCAGAAGCATTGAAGAGGTTAGATGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAACCCAAGGGCAATCCATCTGCATTTCTTAAGCCAGCAACAACTGTTTTATCACCTTATCTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCAGAGCATTCAAGATGTATATAAAAGTATGCCGAAGCATACATTACCTCCTGTTTCTCTTTTAGGACAGTTGTTGTGGCGAGACTTTTTTTACACGGCTGCTTTTGGGACTCCAAATTTTGATAGAATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGATCCAGCTACGCAAATGGGGTTGGATGCATCATCTGGCACGACATTCTGTTGCATGTTTTCTAACTCGAGGCGATCTGTTTGTTCATTGGGAAAAAGGACGAGACGTCTTTGAGAGGCTTCTCATTGATTCAGACTGGGCAATTAATAATGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCCCCAACTACATTTGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAGGGAGTACATTTATGAACCCTGGACGGCTCCTAAAAGCATTCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGTGGTTTCTCATGATTCTGCGAGTAAAGAGTGCCGAAGGAAAATGGGCGAGGCATATGCATTGAATAAAGAATTGAATGGTTTGGTTAGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTAGATGAGAGTGAAGGGCAAGAGGCTGGAGCTAAAAGATATAAGCAACAGCTGATTGGCTGA 1629 0.4457 MRLSPCANTTSMGSLVWFRKGLRIHDNPALEFASRGASHLYPVFVIDPHYMEPDPNASTPGSSRAGLNRIKFLLESLVELDLNLKNLGSRLLLLKGDPAEVVIQCLKEWNVRKLCFEFDTEPYYQSLDVKVKNFALAAGIEVFSAVSHTLFNPSDIIKKNGGKPPLSYQSFVKLAGEPPSPLSTVYSSLPPVGHLGNCDISEVPTIRDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYQSIQDVYKSMPKHTLPPVSLLGQLLWRDFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWTAPKSIQTKANCIIGKDYPMPVVSHDSASKECRRKMGEAYALNKELNGLVSEDDLKNLRRKLDESEGQEAGAKRYKQQLIG 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00178 542 Gene3D HUPs 10 147 IPR014729 -
Pumo7g00178 542 Gene3D - 148 315 - -
Pumo7g00178 542 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 12 150 IPR006050 -
Pumo7g00178 542 MobiDBLite consensus disorder prediction 523 542 - -
Pumo7g00178 542 FunFam Cryptochrome-1 317 538 - -
Pumo7g00178 542 Pfam FAD binding domain of DNA photolyase 301 497 IPR005101 -
Pumo7g00178 542 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 14 194 IPR036155 -
Pumo7g00178 542 Pfam DNA photolyase 14 174 IPR006050 -
Pumo7g00178 542 PANTHER CRYPTOCHROME 14 504 IPR002081 -
Pumo7g00178 542 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 214 503 IPR036134 -
Pumo7g00178 542 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 317 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00178 Pumo-Chr7 1968538 1973117 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00178 K02295 - gmx:100780347 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00178 7 1968538 1973117 Pumo7g00178 7 1968538 1973117 ECH