Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00126 ATGTCGTCTCTCAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTTAAGGAGACTGTGCACAAGCTTGAGCAGGAGTCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTGGAGAAATACCTCTCCGGTTTTACAAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAACGAAGAATTGTTCAAGGAAATCACTCAGCTTCTGACATTGGAAAATTTTAGGGAAAATGAACAATTGTCCAAGTATGGTGATACAAAATCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCCTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGATATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAACCCGTTACTAGGCGCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAGCCTACTCCAACACCAGTGCCAGCACCCCTGGCTGGTTGGATGTCAAATCCTACCACTGTGGCACATCCTGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCGATCCCTGCTGCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGACTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATATCAGATGAGGTGAATCTTCCTGTCAATGTGTTGTCAGCAACATTCCCAGGTCATGGTCAACATAGTCAAGCTTTTAATGCACCTGATGACATACCTAAGACTGTTGTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCAATTTCAGGCTGCTCTTGTCAAAGATCCAGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCCGATGGTGCTTTGTTTGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGCCTACAATTAATCCAATTTCTGCTGCTGCTGCTGCAACCAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGGTTCGTGATCTTGTCCTTGTATGA 1452 0.4339 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQPTPTPVPAPLAGWMSNPTTVAHPAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKTVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMQFQAALVKDPGVSVNRVIWSPDGALFVHLFNSIRWKNKSMPTINPISAAAAATSAALAERASSVVAIAGMVRDLVLV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00126 483 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pumo7g00126 483 Pfam LisH-like dimerisation domain 5 33 - -
Pumo7g00126 483 SMART Lish 4 36 IPR006594 GO:0005515
Pumo7g00126 483 Gene3D - 330 459 IPR015943 GO:0005515
Pumo7g00126 483 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pumo7g00126 483 SMART ctlh 34 92 IPR006595 -
Pumo7g00126 483 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 436 IPR027728 GO:0006355
Pumo7g00126 483 SUPERFAMILY WD40 repeat-like 346 433 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00126 Pumo-Chr7 1521326 1525643 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00126 - - gmx:100782671 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00126 7 1521326 1525643 Pumo7g00126 7 1521326 1525643 ECH