Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00035 ATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTCCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTAGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACATCGGGTTCTGCTACAGCTTCATCTGTTCAGCCTGCCAGCAATCCTGCTACGACTGTATCAACGTCAAATTCCACCCCTGCTTCTGATCCTCCAGTGCAAACTCAGACTGCAAACAACAGTACGTCTAGCACAGATACCCCAACTACAAATGTGTCTGCAGATACCTATGGTCAGGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAATTGGGACAGAGATACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGATTTCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACAGTTTCTAGTACTGGTGCCGGACTTGGATCGCTGGACTTCCTTAGAAATAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGAGATATATTTGAGCAGCCTGAGCAAGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAA 1092 0.4451 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKTSGSATASSVQPASNPATTVSTSNSTPASDPPVQTQTANNSTSSTDTPTTNVSADTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPVGPNSSPLNMFPQETVSSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDIFEQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00035 363 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pumo7g00035 363 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 317 357 IPR015940 -
Pumo7g00035 363 CDD UBA1_Rad23_plant 142 191 - -
Pumo7g00035 363 Gene3D - 1 80 - -
Pumo7g00035 363 SMART CBM 236 279 IPR006636 -
Pumo7g00035 363 Pfam XPC-binding domain 238 293 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pumo7g00035 363 FunFam UV excision repair protein RAD23 1 80 - -
Pumo7g00035 363 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Pumo7g00035 363 FunFam UV excision repair protein RAD23 homolog 310 358 - -
Pumo7g00035 363 FunFam UV excision repair protein RAD23 B 228 294 - -
Pumo7g00035 363 NCBIfam UV excision repair protein Rad23 1 362 IPR004806 GO:0006289
Pumo7g00035 363 CDD Ubl_Rad23 1 74 - -
Pumo7g00035 363 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pumo7g00035 363 Pfam UBA/TS-N domain 319 354 IPR015940 -
Pumo7g00035 363 Pfam UBA/TS-N domain 148 186 IPR015940 -
Pumo7g00035 363 SUPERFAMILY UBA-like 298 360 IPR009060 GO:0005515
Pumo7g00035 363 Gene3D - 141 191 - -
Pumo7g00035 363 SMART uba_6 148 188 IPR015940 -
Pumo7g00035 363 SMART uba_6 319 356 IPR015940 -
Pumo7g00035 363 SUPERFAMILY XPC-binding domain 235 301 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo7g00035 363 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Pumo7g00035 363 FunFam UV excision repair protein RAD23 homolog 141 191 - -
Pumo7g00035 363 MobiDBLite consensus disorder prediction 80 132 - -
Pumo7g00035 363 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 352 - -
Pumo7g00035 363 SUPERFAMILY UBA-like 145 196 IPR009060 GO:0005515
Pumo7g00035 363 Gene3D - 310 358 - -
Pumo7g00035 363 Gene3D - 228 294 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo7g00035 363 PRINTS DNA repair protein Rad23 signature 264 286 IPR004806 GO:0006289
Pumo7g00035 363 PRINTS DNA repair protein Rad23 signature 345 360 IPR004806 GO:0006289
Pumo7g00035 363 PRINTS DNA repair protein Rad23 signature 313 329 IPR004806 GO:0006289
Pumo7g00035 363 PRINTS DNA repair protein Rad23 signature 330 344 IPR004806 GO:0006289
Pumo7g00035 363 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00035 Pumo-Chr7 561121 568109 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00035 K10839 - gmx:100819019 684.871