Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03077 ATGGCTCTAACTCTGAACCTAAACCTCCCATTGCTACTCTCACTTTGCATCATCTTCACAACCCTCTCTCTCACCTCCTCTCGCACCATCACAACTCCATCACACACCAATGTTCTCGATGTCTCTTCCTCTCTCCACCAAGCACACCAAATCCTCTCCTTCAACCCTCAACTTTTAGAACAATCTTCAGAAACAGAAACCCCCACTTCACCATTCTCTCTTCGACTCCACCCAAGAGAAACCCTCCTCAACGAACAGCACCCAAACTACAAAACCCTAGTCCTCTCCCGACTCGCCCGCGACTCAGCCCGAGTCAACTCGCTCAACACAAAACTCCAGCTCGCCCTCTCCAACCTCAACAGGTCGGATCTCTACCCGACCGAGACGGAGCTCCGACCCGAAGACCTCTCCACGCCGGTCTCCTCCGGCACCGCCCAGGGCAGCGGCGAGTACTTCTCACGCGTTGGCGTGGGGCAACCCTCCAAGCCCTTCTACATGGTCCTCGACACCGGCTCCGACATCAACTGGCTCCAGTGCAAGCCCTGCTCCGATTGCTACCAACAATCCGACCCGATTTTCGACCCGACAGCGTCCTCCTCGTACTACCCCTTAACCTGCGACGCGCAACAGTGCCAGGACCTCGAAATGTCCGCGTGCAGAAACGGTAAATGCCTCTACCAAGTCTCATACGGTGACGGCTCCTTCACCGTTGGCGAATACGTCACCGAAACGGTGTCGTTCGGTGCCGGGTCGGTTAATAAGGTCGCAATCGGCTGCGGACATGACAATGAGGGTTTGTTCGTTGGGGCCGCTGGGCTTCTTGGGCTCGGTGGTGGGCCTCTCTCATTAACCTCGCAAATCAAAGCGACGTCGTTTTCTTACTGTTTAGTGGATCGCGACTCAGGGTAA 909 0.5567 MALTLNLNLPLLLSLCIIFTTLSLTSSRTITTPSHTNVLDVSSSLHQAHQILSFNPQLLEQSSETETPTSPFSLRLHPRETLLNEQHPNYKTLVLSRLARDSARVNSLNTKLQLALSNLNRSDLYPTETELRPEDLSTPVSSGTAQGSGEYFSRVGVGQPSKPFYMVLDTGSDINWLQCKPCSDCYQQSDPIFDPTASSSYYPLTCDAQQCQDLEMSACRNGKCLYQVSYGDGSFTVGEYVTETVSFGAGSVNKVAIGCGHDNEGLFVGAAGLLGLGGGPLSLTSQIKATSFSYCLVDRDSG 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03077 302 Gene3D Acid Proteases 126 302 IPR021109 -
Pumo6g03077 302 Pfam Xylanase inhibitor N-terminal 151 298 IPR032861 -
Pumo6g03077 302 PANTHER ASPARTYL PROTEASES 17 300 IPR001461 GO:0004190|GO:0006508
Pumo6g03077 302 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 166 177 IPR001969 GO:0004190|GO:0006508
Pumo6g03077 302 SUPERFAMILY Acid proteases 145 302 IPR021109 -
Pumo6g03077 302 ProSiteProfiles Peptidase family A1 domain profile. 151 302 IPR033121 -
Pumo6g03077 302 FunFam Aspartyl protease AED1 132 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03077 Pumo-Chr6 73072839 73073747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03077 128 289 Miscellaneous Gene Families AT1G77480 29.609 6.93e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03077 K22683 - gmx:100784849 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03077 6 73072839 73073747 Pumo6g03077 6 73072839 73073747 ECH