Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03064 ATGGAAGATGATCAATCTCCTCGGATCAAAGGTGTTGTTATAATCTCCCTTCCACCACCAGATAACCCTTCTTTGGGCAAAACCATCACTGCTTTTACTTTCTCTGACCCTTCTCCTCCTCAACCTTATCTTCTGCAACAACCCCACCAACAACACCAAACACACCCCAATGCTCACAACAACACTGATCCTCCACTTCAGTCTTACCCATCTAATCCTCAGCTTAGTTTTTCATTCAGAAGACTCTTCCACAGCACCCCAATGAAGCTTTTCTCCTTCTTTGGAATTCTTCTCTTTGCTCTATTTCTCTATGGTTCTGTTTCTTCAACCACCACTCTGGAACTGCGTGGCTCCAAGGATGATGATGATGACAAAGCCACTTCAATTTTGTTCCCTTTGTTTCCGAAATTTGGTGTTTTGGGGCAGAAGGATGTGAGGCTCCAACTGGGGAAGCTTGCTCAAAAGCAGAAGTTTTTGACACAAAGAAACGATGGTGTTGATTCTGGCGTTGACTCTTCATCCGTTTTTCCAGTCAGTGGCAATGTTTATCCAGATGGGTTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAAAAGTTATTTTCTTGATGTGGATACAGGGAGTGACTTAACTTGGATGCAGTGTGATGCTCCATGCAGAAGTTGTGGGAAGGGAGCACATGCTTTGTACAAGCCAACAAGATCCAATGTTGTATCATCCGTGGACTCTCTCTGCTTGGATGTTCAGAAAAAACAGAAGAATGGACATCATGACGAAAGTTTGTTACAGTGTGACTATGAAATTCAATATGCAGACCATAGTTCTTCCTTGGGGGTTCTTGTTAGAGATGAGATTCATCTTGTAACTACTAATGGATCCAAAACCAAGCTAAATTTTGCTTTTGGGTGTGGATATGATCAAGAAGGCTCACTTTTGAAAACATTGGATAAAACAGATGGAATCATGGGACTGAGTAGGGCAAAAGTAAGCCTACCCTACCAGTTAGCGAGTAAGGGGCTTATTAAGAATGTGGTTGGTCATTGCCTAAGCAATGATGGAGCTGGTGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCATATTGGGGTATGACTTGGGTACCCATGGCCTATACCCTTACTTCGGATTTATACCAAACTGAGATTCTTGGAATAAATTATGGAAATCGCCAACTCAGATTTGATGGCCAAAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGTTCTTATACATATTTTCCAAGAGAGGCATACTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGGTTAGGACTCGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCAAATTTCCCAATCAAATCTGTCAAAGATGTCAAGGATTACTTCAAGACCTTAACTCTTCGGTTCGGAAGCAAGTGGTGGATTTTGTCCACATTGTTTCAGATACCTCCAGAGGGTTACTTGATCATAAATAACAAAGGCCATGTGTGCTTGGGTATCCTTGACGGCAGTAATGTAAATGATGGATCCGCAATTATTCTTGGAGACATTTCATTGAGAGGATATTCGGTTGTATATGATAATGTGAAGCAGAAAATTGGTTGGAAGCGAGCAGATTGTGGCATGCCAAGCGGAAGATTGAGAAAGAAAAATAATTTCATATAG 1692 0.4131 MEDDQSPRIKGVVIISLPPPDNPSLGKTITAFTFSDPSPPQPYLLQQPHQQHQTHPNAHNNTDPPLQSYPSNPQLSFSFRRLFHSTPMKLFSFFGILLFALFLYGSVSSTTTLELRGSKDDDDDKATSILFPLFPKFGVLGQKDVRLQLGKLAQKQKFLTQRNDGVDSGVDSSSVFPVSGNVYPDGLYFTILRVGNPPKSYFLDVDTGSDLTWMQCDAPCRSCGKGAHALYKPTRSNVVSSVDSLCLDVQKKQKNGHHDESLLQCDYEIQYADHSSSLGVLVRDEIHLVTTNGSKTKLNFAFGCGYDQEGSLLKTLDKTDGIMGLSRAKVSLPYQLASKGLIKNVVGHCLSNDGAGGGYMFLGDDFVPYWGMTWVPMAYTLTSDLYQTEILGINYGNRQLRFDGQSKVGKVVFDSGSSYTYFPREAYLDLVASLNEVSGLGLVQDDSDTTLPICWQANFPIKSVKDVKDYFKTLTLRFGSKWWILSTLFQIPPEGYLIINNKGHVCLGILDGSNVNDGSAIILGDISLRGYSVVYDNVKQKIGWKRADCGMPSGRLRKKNNFI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03064 563 PANTHER ASPARTYL PROTEASES 97 543 IPR001461 GO:0004190|GO:0006508
Pumo6g03064 563 Gene3D Acid Proteases 370 551 IPR021109 -
Pumo6g03064 563 ProSiteProfiles Peptidase family A1 domain profile. 188 545 IPR033121 -
Pumo6g03064 563 SUPERFAMILY Acid proteases 179 549 IPR021109 -
Pumo6g03064 563 PRINTS Pepsin (A1) aspartic protease family signature 411 422 IPR001461 GO:0004190|GO:0006508
Pumo6g03064 563 PRINTS Pepsin (A1) aspartic protease family signature 194 214 IPR001461 GO:0004190|GO:0006508
Pumo6g03064 563 PRINTS Pepsin (A1) aspartic protease family signature 521 536 IPR001461 GO:0004190|GO:0006508
Pumo6g03064 563 Pfam Xylanase inhibitor N-terminal 188 364 IPR032861 -
Pumo6g03064 563 Pfam Xylanase inhibitor C-terminal 397 545 IPR032799 -
Pumo6g03064 563 MobiDBLite consensus disorder prediction 40 70 - -
Pumo6g03064 563 Gene3D Acid Proteases 165 364 IPR021109 -
Pumo6g03064 563 FunFam Aspartyl protease APCB1 369 555 - -
Pumo6g03064 563 FunFam Aspartyl protease family protein 165 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03064 Pumo-Chr6 72824402 72828953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g03064 170 549 Miscellaneous Gene Families AT1G77480 47.423 1.29e-109 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03064 - - gmx:100810687 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03064 6 72824402 72828953 Pumo6g03064 6 72824402 72828953 ECH