Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03062 ATGGCGATGGTGGACCAGCCTCTGTATCCGATTGCCGTTTTGATCGACGAGCTAAAGAACGAGGACATTCAGCTGCGCCTGAACTCGATCCGGAGGCTCTCCACGATCGCGCGCGCGCTCGGCGAGGAGCGCACGCGGAAGGAGCTGATTCCGTTCCTCAGCGAGAACAACGACGATGACGACGAAGTGCTCCTCGCAATGGCCGAGGAGTTAGGCGTCTTCATTCCCTACGTCGGAGGCGTCGAACACGCCAACGTGCTTCTTCCTCCCTTGGAGACACTCTGCACCGTTGAGGAAACCTGCGTCAGAGACAAATCGGTGGAGTCGCTGTGCAGAATTGGAGCTCAGATGAGGGAGCAAGACTTGGTTGAACACTTCATTCCTCTAGTTAAGAGGCTGGCTGCTGGTGAGTGGTTCACGGCGCGGGTTTCGTCGTGTGGCTTGTTCCATATTGCTTACCCTAGTGCGCCGGAGGTGGTGAAGACTGAACTGAGAGCCATATATGGTCAGCTGTGTCAAGATGATATGCCCATGGTTAGGAGATCTGCTGCCACAAACTTGGGAAAGTTTGCTGCCACTGTTGAAGCTCCTCACTTGAAATCTGACATCATGACTGTGTTTGAGGATCTCACACAGGATGATCAAGATTCTGTTCGGCTACTTGCTGTTGAGGGTTGTGCAGCTCTGGGAAAATTGTTGGAACCTCAAGATTGTGTGGCACATATTCTTCCTGTCATAGTTAATTTTTCTCAGGATAAGTCATGGCGTGTTCGTTACATGGTTGCTAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGATCCCACCAGGTCAGAATTGGTTCCTGCATATGTTCGTCTGCTGCGTGATAATGAGGCTGAAGTACGTATCGCTGCTGCTGGGAAAGTAACTAAGTTCTCCCGCATATTAAATCCTGAACTTGCCATTCAGCATATTCTACCATGTGTGAAGGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCATTGGCTTCCGTTATAATGGGAATGGCACCGGTGTTAGGGAAGGATGCCACAATTGAGCAACTTTTGCCTATTTTCCTTTCTCTTTTGAAAGATGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGAACCAGGTTATTGGTATTGATTTGTTATCTCAGTCTCTGTTGCCAGCTATAGTTGAACTTGCTGAGGATCGGCACTGGAGAGTTCGACTTGCAATCATAGAATATATACCCTTATTGGCAAGCCAGTTGGGTGTAGGTTTTTTTGATGATAAGCTTGGAGCTCTTTGCATGCAATGGCTAAAGGACAAGGTATACTCAATCCGTGATGCAGCCGCTAATAACATCAAACGCTTGGCAGAAGAATTTGGACCAGATTGGGCAATGCAACACATTATTCCCCAGGTTTTTATAGCAGATGAACTTAGTTTCTTGATGTACATCTGCAGTATATTTTACCTTAAACTTTAG 1503 0.4717 MAMVDQPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKSVESLCRIGAQMREQDLVEHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEVVKTELRAIYGQLCQDDMPMVRRSAATNLGKFAATVEAPHLKSDIMTVFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYVRLLRDNEAEVRIAAAGKVTKFSRILNPELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNIKRLAEEFGPDWAMQHIIPQVFIADELSFLMYICSIFYLKL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Pumo6g03062 500 SUPERFAMILY ARM repeat 8 480 IPR016024 -
Pumo6g03062 500 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Pumo6g03062 500 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 500 - -
Pumo6g03062 500 Pfam HEAT repeats 361 460 - -
Pumo6g03062 500 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 480 - -
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Pumo6g03062 500 Gene3D - 2 488 IPR011989 -
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Pumo6g03062 500 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03062 Pumo-Chr6 72810515 72818709 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03062 K03456 - gmx:100799440 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03062 6 72810515 72818709 Pumo6g03062 6 72810515 72818709 ECH