Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03042 ATGGCGTTCCCCAACACTTGTAAACTCTCAGAACTGTCTTTCAAATCATCACTCTCATCGCTGAACCTTCCTCCTCGCTCTTTCCGCAACAAATTCCCATTTCGCAATCTCACCTTCGCTTCTCTCCCAACCCCAAAGCCCAATCCCTCCGCCCCCTGGCTCACCAAATCCCCCTCCCCCAAAAGGGCCACAGAACCCCTCACCGCCGGCGACCCAATTCCCGACAAAAAACCGCAGAACGCCGTCGAGAGAATCGTCCTCCGGTTACGCAACCTCGGTCTGCCCACAGAAGAAGAAGAACAGCAACAGGAAGAGGAAATTCCGGCGAGTACTCCTTCGCCGGTGACCGGAGATGAGAGGCTGGGGGAGCTGCTCCAGCGGGAGTGGGTGCGCCCGGACGCCGTGTTGGTGGGCGAGGACGATGAGGAGGAGGAGATGATGCTGCCGTGGGAGAGGGAGGATGAGAAGAAGGAGGTGGTGGTGGTGGTGGGTGGTGGTGAAGAGGGGTTGTTCAAGAAGAGGAGGGTTAGGGCTCCGAGTTTGGCCGATTTGACCCTTGAGGATGAGTTGTTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGGTTAGTGTCCCCAAGGCTGGACTCACTCAGGAGGTCATGGAGAAGATTCATAAGAGGTGGAGGAAGGAGGAGTTGGTGAGACTCAAGTTTCATGAGGAACTCGCAAAGGACATGAGGAAGGCTCATGAGATTGTTGAGCGTCGAACCGGAGGATTGGTTACGTGGAGGTCAGGGAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCCTGACTCCCGGAAGGAAGTTAATGAGAAGAAAGGTGATGGCTTTTTCGTGCCGGATGTCTCGTCAGGAAGTTTGTCAAAAAGGGAAGACAGTAATGCAACCTCAACCGCAGGGAAGAGTGAGTTGGTTGTGAGGGAGCGAGAACATCCAGAGAATATGTCAGAGGCGGAAGCAGAGTACAATGCCCTCCTTGATGGTTTAGGTCCTCGGTTTGTTGAATGGTGGGGTACGGGGATACTTCCTGTTGATGCTGATTTGCTTCCCCGGATAGTTCCAGGTTACAAAACACCTTTTAGGCTTCTTCCTACTGGGATGCGTTCTCGGCTAACAAATGCAGAGATGACCAATTTAAGGAAGCTTGCAAAATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTGGCATGTGCTATTCTTAAGCTTTGGGAGAAAAGTTTGGTTGCAAAGATTGCTGTCAAACGTGGGATCCAGAACACAAACAATGAACTGATGGCTGAGGAGCTGAAGATGTTAACAGGGGGTACCTTGCTGCTAAGGAATAAGTATTTCATTGTTATATACCGTGGGAAAGACTTTGTTCCGACAAGTGTGGCTGCAGTTTTAGCTGAAAGAGAGGAATTGACAAAACAGGTACAGGATGTTGAAGACAAGGTGCGGTGCAGAGCAGTTGATGCAATTCCATTGGGGCAAGGTGAGGCTGGGACTTTAGCAGAGTTCTATGAGGCCCAGGCTGGGACTTTAGCAGAGTTCTATGAGGCCCAGGCTCGATGGGGAAGGGAAATATCTCCTGAAGAACGTGAGAAGATGGTGGAAGAAGCTGCCAAAGCCAAGACTGCTAAGCTTGTCAGACAAATTGAACATAAAATATCTATAGCCCAGACCAAAAAGCTTAGAGCAGAAAAGCTCTTAGCCAAAATAGAAGCATCTATGGTTCCAGCTGGTCCTGATTATGATCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAGCCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTTGTCGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTTGAAGACACAGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTGGTGGCAATAGAGAAAGTTTCCAAAGAATTTGCTCTTATTTACTATCGTGGAAAGAATTATAAGAGACCCATTACTCTGAGGCCTAGGAACCTTCTAACGAAGGGAAAGGCATTAAAGCGTCATGTAGCCATGCAACGTCATGAGGCTCTGAGTCAGCATATTACTGAATTGGAAAAAACTATAGAACAAATGAAAAAAGAACTTGGTATGACTCAAGATTCGGATGTTGAAGATGGGGGGAGCATAGAGGAAGAGGATCATAACCAAATAGACAACATCTCAGTATTGACCCTGAGTGAGGATGAAGATTCTGATGGTTTTGATGATGAGGAAGACAGTGATTGGGAAGATGACGAGGACTCTGAGTTTTCAGAATTCATAAATGATGAGCATCCTTGA 2418 0.4752 MAFPNTCKLSELSFKSSLSSLNLPPRSFRNKFPFRNLTFASLPTPKPNPSAPWLTKSPSPKRATEPLTAGDPIPDKKPQNAVERIVLRLRNLGLPTEEEEQQQEEEIPASTPSPVTGDERLGELLQREWVRPDAVLVGEDDEEEEMMLPWEREDEKKEVVVVVGGGEEGLFKKRRVRAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSRKEVNEKKGDGFFVPDVSSGSLSKREDSNATSTAGKSELVVREREHPENMSEAEAEYNALLDGLGPRFVEWWGTGILPVDADLLPRIVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMAEELKMLTGGTLLLRNKYFIVIYRGKDFVPTSVAAVLAEREELTKQVQDVEDKVRCRAVDAIPLGQGEAGTLAEFYEAQAGTLAEFYEAQARWGREISPEEREKMVEEAAKAKTAKLVRQIEHKISIAQTKKLRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQMKKELGMTQDSDVEDGGSIEEEDHNQIDNISVLTLSEDEDSDGFDDEEDSDWEDDEDSEFSEFINDEHP 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03042 805 MobiDBLite consensus disorder prediction 38 77 - -
Pumo6g03042 805 Coils Coil 720 747 - -
Pumo6g03042 805 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 35 783 IPR045278 GO:0000375|GO:0003729
Pumo6g03042 805 Pfam CRS1 / YhbY (CRM) domain 384 468 IPR001890 GO:0003723
Pumo6g03042 805 Pfam CRS1 / YhbY (CRM) domain 187 269 IPR001890 GO:0003723
Pumo6g03042 805 Pfam CRS1 / YhbY (CRM) domain 603 678 IPR001890 GO:0003723
Pumo6g03042 805 ProSiteProfiles CRM domain profile. 382 479 IPR001890 GO:0003723
Pumo6g03042 805 MobiDBLite consensus disorder prediction 774 798 - -
Pumo6g03042 805 SUPERFAMILY YhbY-like 601 699 IPR035920 -
Pumo6g03042 805 SMART CRS1_YhbY_2 384 468 IPR001890 GO:0003723
Pumo6g03042 805 SMART CRS1_YhbY_2 186 269 IPR001890 GO:0003723
Pumo6g03042 805 SMART CRS1_YhbY_2 602 689 IPR001890 GO:0003723
Pumo6g03042 805 FunFam CRS2-associated factor 1, chloroplastic 185 280 - -
Pumo6g03042 805 MobiDBLite consensus disorder prediction 293 314 - -
Pumo6g03042 805 SUPERFAMILY YhbY-like 384 475 IPR035920 -
Pumo6g03042 805 SUPERFAMILY YhbY-like 185 275 IPR035920 -
Pumo6g03042 805 ProSiteProfiles CRM domain profile. 184 280 IPR001890 GO:0003723
Pumo6g03042 805 Coils Coil 477 497 - -
Pumo6g03042 805 ProSiteProfiles CRM domain profile. 600 700 IPR001890 GO:0003723
Pumo6g03042 805 MobiDBLite consensus disorder prediction 95 116 - -
Pumo6g03042 805 Gene3D - 383 476 IPR035920 -
Pumo6g03042 805 Gene3D - 184 285 IPR035920 -
Pumo6g03042 805 MobiDBLite consensus disorder prediction 299 314 - -
Pumo6g03042 805 MobiDBLite consensus disorder prediction 744 805 - -
Pumo6g03042 805 FunFam CRM-domain containing factor CFM3B, chloroplastic 601 703 - -
Pumo6g03042 805 Coils Coil 232 252 - -
Pumo6g03042 805 FunFam CRS2-associated factor 1, chloroplastic 383 479 - -
Pumo6g03042 805 Gene3D - 602 704 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03042 Pumo-Chr6 72567288 72573715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03042 - - gmx:100788177 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03042 6 72567288 72573715 Pumo6g03042 6 72567288 72573715 ECH
Pumo6g03042 6 72567288 72573715 Pumo6g03042 6 72567288 72573715 PCT