Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g03029 ATGAGGTCTTCTTCTTCGGACAGGATCAACATCGCTGCCAGTGCTCAGAAAGTCGATGTCGATAACCGAATCTCTCTCCGATTCTACTACCGCATCGCCGATAACATCCTCCGACAGGCTGATATCTTTCGTGCAGAGAAGAATATTATTGATCTATATGTCATGCTTTTAAGATTTTCTAGTTTGGTGTCTGAGACAATACCACGTCACCGAGACTATAGATCATCTCCACAAAGGCAGAAAGAATCATTGAAAAAGAAATTGTTAATTTCTTTGAATGAACTGGAGAACTTGAAACCAGTGGTCCAACAGAAGATCAACGAGCTTAACAACAAGCTTGCATACCAACAAAATGGGAGGGGAAAATTTAATTCAAATAATTCACTGGATTATTCTCCTGTGAAAAAGCAAACTTCGGCTAGTTATGGCCTAACAAAGGCAGTCAGACCTACTGCTGGGGAGTTTGTTTACCAAGGATCAAGGAGCCAACAGTTGTCTTATGTCAGGCCTGTGGAAGAGCATGTACGAAGATTATCTCTAACTCTTCCACCTCCTAAGGAGGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAACGGGCTAAAAGGGCAGTGGAGACCACCTACCATTGATAGAGGGATCAAGTATCCAAGCAACATAGATCTGTTTCCTGTTGAATTACCAAGTCTACAACATTCCTTGGAAGATGAATCTCTAAAAAAGAAAGATAATAGCATTGCAGAACATCATAAATCAGAGTTAGATTCCATTCTAACCCAAAGTGAGGACTGCCAGCCCCAGCCCCAACCTCAGCCTCAGCCTCAGCATGATCAGGAGCCTCCCTCTCTTATTTCTTTTGAAACAACAGAAATCTCTGCTCAAATAGAAGTTATCAGACAACCTTCTCCTCCACCCGTACTTGCTGAAGTACAAGATTTGGTCCCTGCAGTGTCACCTTGTGTTAATGAGGCAGGATGTAAGACAGAGATTCCATCATCAGATAGTTCTGTTCATGTCGAGGCTCCTATGCAATTGCACATTTCAACTGCTTTGATGGAGAGTTTTATGAAGCTTGCCAAGTCGAATACAAAAAAAAATTTAGAGACTTGTGGTGTCCTTGCCGGTTTGCTTGCAAGTAAAAACAGAAAATTTTATATTACCGCCCTTATAATCCCAAAGCAGGAGTCAACATCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGAAGTGCAAGATAAACGGTCTCTTTTTCCCCTTGGGTGGATCCATACACATCCTACACAATCTTGTTTTATGTCATCAATTGATCTGCACACCCATTACTCCTATCAGATTATGCTGCCAGAATCTGTTGCAATAGTCATGGCACCAAGAGATAGTTCGAGAAACCATGGCATTTTTCGGTTGACAACTCCAGGTGGAATGTCTGTGATTAAACAATGTGATCAACGTGGGTTTCATCCACATAGTCAGCCTCCAGATGGTGGTCCTATTTACAAGACATGTACAGATGTATACATGAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA 1566 0.4138 MRSSSSDRINIAASAQKVDVDNRISLRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVSETIPRHRDYRSSPQRQKESLKKKLLISLNELENLKPVVQQKINELNNKLAYQQNGRGKFNSNNSLDYSPVKKQTSASYGLTKAVRPTAGEFVYQGSRSQQLSYVRPVEEHVRRLSLTLPPPKEETLSRHSILGPNGLKGQWRPPTIDRGIKYPSNIDLFPVELPSLQHSLEDESLKKKDNSIAEHHKSELDSILTQSEDCQPQPQPQPQPQHDQEPPSLISFETTEISAQIEVIRQPSPPPVLAEVQDLVPAVSPCVNEAGCKTEIPSSDSSVHVEAPMQLHISTALMESFMKLAKSNTKKNLETCGVLAGLLASKNRKFYITALIIPKQESTSDSCQTTNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPRDSSRNHGIFRLTTPGGMSVIKQCDQRGFHPHSQPPDGGPIYKTCTDVYMNPDLKFDVIDLR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g03029 521 Gene3D Cytidine Deaminase, domain 2 326 521 - -
Pumo6g03029 521 Pfam USP8 dimerisation domain 11 105 IPR015063 -
Pumo6g03029 521 Coils Coil 92 112 - -
Pumo6g03029 521 Gene3D - 4 129 - -
Pumo6g03029 521 CDD MPN_AMSH_like 344 521 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Pumo6g03029 521 SMART pad1_6 344 474 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo6g03029 521 FunFam AMSH-like ubiquitin thioesterase 3 5 121 - -
Pumo6g03029 521 ProSiteProfiles MPN domain profile. 345 477 IPR037518 -
Pumo6g03029 521 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 344 450 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pumo6g03029 521 FunFam AMSH-like ubiquitin thioesterase 3 330 521 - -
Pumo6g03029 521 MobiDBLite consensus disorder prediction 184 208 - -
Pumo6g03029 521 MobiDBLite consensus disorder prediction 261 281 - -
Pumo6g03029 521 PANTHER AMSH-LIKE PROTEASE 3 521 - -
Pumo6g03029 521 SUPERFAMILY JAB1/MPN domain 343 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g03029 Pumo-Chr6 72406776 72412148 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g03029 K11866 - gmx:100804754 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g03029 6 72406776 72412148 Pumo6g03029 6 72406776 72412148 ECH