Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02954 ATGGCTGTGGCTGATGCATTTGATGAGCAGTGTGATTACCTGTTCAAGGCAGTTCTGATTGGGGATTCAGGAGTTGGGAAGTCAAATCTGATAACAAGGTTTGCAAAAGATGAATTCAGGTTGGATTCCAAGCCAACCATAGGTGTGGAATTTGCTTACAGAAACATCAAGGTCAGGGACAAGCTCATCAAAGCACAGATATGGGACACTGCCGGCCAAGAGAGGTTTAGGGCTATCACAAGCTCATACTACAGAGGAGCCTTGGGGGCAATGCTAGTGTATGACATAACCAAGAGAGCAACTTTTGTGAATGTAGGAAAATGGCTACATGAGTTGAGAGAGTTTGGAGGAGAAGACATGGTGGTTGTTTTGGTGGGAAACAAATCTGATTTGGATCAATCAAGGGAAGTTGAGAGAGAAGAAGGGAAAGGGTTTGCAGAAACAGAAGGGTTATGTTTCATGGAAACCTCTGCTTTGCAGAATCTGAATGTTGAGGAAGCATTCTTCGAAATGATCACTAAGATCCATGACATCATAAGCCAGAAAAGTTTGGAAACCAAAATGAATGGTACAGCATTAAATCTTCCTAGTGGGAAGGAGATCCATATAGCTGATGAAGTTACAGCTACTAAACAAGCTAAATATTGTTGTTCATGA 657 0.4201 MAVADAFDEQCDYLFKAVLIGDSGVGKSNLITRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITKRATFVNVGKWLHELREFGGEDMVVVLVGNKSDLDQSREVEREEGKGFAETEGLCFMETSALQNLNVEEAFFEMITKIHDIISQKSLETKMNGTALNLPSGKEIHIADEVTATKQAKYCCS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02954 218 ProSiteProfiles small GTPase Rho family profile. 8 176 - -
Pumo6g02954 218 SMART ras_sub_4 12 178 - -
Pumo6g02954 218 PANTHER DRAB11-RELATED 9 194 - -
Pumo6g02954 218 SMART ran_sub_2 20 215 - -
Pumo6g02954 218 CDD Rab11_like 12 176 - -
Pumo6g02954 218 ProSiteProfiles small GTPase Rab1 family profile. 10 217 - -
Pumo6g02954 218 Pfam Ras family 16 176 IPR001806 GO:0003924|GO:0005525
Pumo6g02954 218 NCBIfam small GTP-binding protein domain 14 168 IPR005225 GO:0005525
Pumo6g02954 218 PRINTS Transforming protein P21 ras signature 118 131 - -
Pumo6g02954 218 PRINTS Transforming protein P21 ras signature 38 54 - -
Pumo6g02954 218 PRINTS Transforming protein P21 ras signature 153 175 - -
Pumo6g02954 218 PRINTS Transforming protein P21 ras signature 15 36 - -
Pumo6g02954 218 PRINTS Transforming protein P21 ras signature 56 78 - -
Pumo6g02954 218 FunFam ras-related protein RABA5a 7 217 - -
Pumo6g02954 218 SMART rab_sub_5 15 178 - -
Pumo6g02954 218 Gene3D - 7 217 IPR027417 -
Pumo6g02954 218 SMART rho_sub_3 17 178 IPR001806 GO:0003924|GO:0005525
Pumo6g02954 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 188 IPR027417 -
Pumo6g02954 218 ProSiteProfiles small GTPase Ras family profile. 9 218 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02954 Pumo-Chr6 70087174 70096040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02954 16 169 EF-hand Containing Proteins AT5G27540 28.313 3.51e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02954 K07976 - gmx:100815793 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02954 6 70087174 70096040 Pumo6g02954 6 70087174 70096040 ECH