Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02720 ATGAGTTTCGCGGCGTACAAGATGATGCAGTGCCCCACCGGCATCGACAACTGCGCCGCCGGCTTCCTCACCCACTCCCGCTCCGACTTCGTCCCTCTCCAGTCCGCCGACGACCTCGACGCCGAGTGGCCCTCCCGCCCCCGCCACGTCGGCCCCCTCCCCAACCTCGTCGTCACCGCCGCCAACGTCCTCGAAGTCTACGCCGTCCGCCTCCAGGAGGACCAGCCGCCCAAGGCCGCCGCCACCGACTCCCGCCGCGGCGCCCTCCTCGACGGCATCGCCGGGGCCTCCCTCGAGCTCGTTTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTTTTGAGCATTGGAGGTGGTGATGTTTCTAGGATGAGAGATTCTATCATCTTAACTTTTGCAGATGCAAAGATTTCAGTTCTTGAGTATGATGATTCTCTTCACGGACTTCGTACTAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCGGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTATCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGCTGGTTCTGGTTTAGTTGGGGACGATGATACCTTGGGATCTTCAGGAGCAGTTGCTGCTCGTATTGAGTCATCTTATATGATAAACCTACGTGACTTGGATATGAGGCATGTAAAAGACTTTATGTTTGTTCATGGCTATATTGAACCTGTAATGGTGATTTTGCATGAGCGTGAGCTCACTTGGGCCGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTAAATCTTCCCCATGATGCGTGCAAGCTTCTTGCGGTGCCCTCGCCAATAGGTGGCGTTCTTGTAATTGGTGCCAACACTATTCATTATCACAGTCAGTCTGCTTCTTGTGCATTGGCCTTGAATAGCTATGCTGTTACACTTGACAGTAGTCAAGAGATACCAAGATCAAGTTTCAATGTGGAGCTTGATGCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCAACAAAAACTGGCGAACTGCTATTGCTTACGCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACAACAATTGGAAGTTCTCTGTTTTTCCTCGCCAGTCGATTAGGGGACAGTATGCTGGTGCAATTTTCTTGTGGATCAGGTGTTTCCATGTTGTCATCCAATCTAAAAGAAGAGGTTGATGATATTGAAGCAGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGGTCTGCTCCAAATAGAACAGAATCAGCACAGAAATCTTTTTCGTTTGCAGTGAGGGATTCATTGATTAACGTTGGTCCTTTGAAAGATTTCTCATACGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTTTGCGGCAATCAATTCGCCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGCTCTCATAATGCTGATTCTTCTAAGATGGCTGATGACGACGATGAGTATCATGCTTACCTTATTATTAGTTTGGAGGCTCGTACTATGGTACTAGAAACTGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCCGCAGGGAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCTAATTCGGAATCTGGTTCTGCATCTGAGAGTGCTATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTATTCGACTTCTGATTGGAGATCCTAGTACCTGCACTATTTCTGTCACTTCTCCAGCTTCATTTGAGAGCTCCAAGGGATCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCTGAGCCTTGGCTGAGGAAGACTAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGGACTGATGGTGCAGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGTAACCTTGAAATATTTGATGTGCCCAATTTCAATTGTGTATTTTCTGTGGAAAATATTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGACGAAAGAGGTACTAAAAGATTCTAAAAAAGGGGATAGAGATGGAGTGGTCAACCAAGGGAGGAAGGAAAATATACCGAATATGAAGGTTGTAGAGTTGGCCATGCAGAGATGGTCAGGGCAGCATAGCCGTCCATTTCTTTTTGGGATTTTAAGTGATGGAACTATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCAGCATCAGCCAGAGGATCCATTGGCCTTAGCAGTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATGCCAGGGAGGATACATTAAATGGATCACCTTGTCAACAAATTACTATTTTCAAGAATATTGGCAGTTATCAAGGATTCTTCCTATCAGGGTCAAGACCAGCTTGGGTTATGGTGTTGAGGGAACGGCTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTCCTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACTCCACACCAAGTAACATACTTTGCGGAGAAGAACTTATATCCACTTATTGTCTCATTTCCTGTTCTTAAGCCACTAAATCAAGTTATTTCTCTGGTTGACCAAGATGTCAACCATCAAAATGAGAGTCAGAATATGAATTCTGATGAGCAAAACCGCTTTTATCCTATTGATGAATTTGAGGTTCGTATTATGGAGCCAGAAAAGTTTGGTGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGGATGGTTACTCTACTGAATACAATCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTCCTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAACTCTGGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAATTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCACCACCATTGCATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGCGATATCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAATTGAGCTTATTAGCCAAGGATTTTGGTTCTCTCGATTGTTTTGCGACGGAATTTTTGATTGATGGAAGTACTCTTAGTCTCATGGTTTCAGATGATAATAGAAACATCCAGATTTTTTACTATGCACCAAAGATGTCCGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTGACTAAATTCTTAAGGTTGCAAATGCTATCCACTTCGGATCGAGCTGGTTCTGTTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTATTATTTGGTACCTTGGATGGAAGTATTGGTTGCATTGCGCCTCTTGATGAAATCACATTTCGCAGACTGCAGTCTTTGCAGAGAAAGCTTGTTGATGCTGTACCCCATGTTGCTGGCCTGAATCCCAGAGCTTTCAGACAATTTCGGTCAAATGGAAAGGCCCATCGGCCTGGCCCTGACAGTATAGTTGATTGCGAGCTGCTATGCCATTACGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGATTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGTGATCTGTCTCTTGGAACAAGCTTCTTGTGA 4347 0.4371 MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVPLQSADDLDAEWPSRPRHVGPLPNLVVTAANVLEVYAVRLQEDQPPKAAATDSRRGALLDGIAGASLELVCHYRLHGNVETMAVLSIGGGDVSRMRDSIILTFADAKISVLEYDDSLHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLIYDLQMIILKATQAGSGLVGDDDTLGSSGAVAARIESSYMINLRDLDMRHVKDFMFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDACKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVTLDSSQEIPRSSFNVELDAANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGSSLFFLASRLGDSMLVQFSCGSGVSMLSSNLKEEVDDIEADAPSKRLRRSPSDALQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESGSASESAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDVPNFNCVFSVENIMSGKSHLVDALTKEVLKDSKKGDRDGVVNQGRKENIPNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSASARGSIGLSSTNVSRLRNLRFVRVPLDAYAREDTLNGSPCQQITIFKNIGSYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDVNHQNESQNMNSDEQNRFYPIDEFEVRIMEPEKFGGPWQTKATIPMQSSENALTVRMVTLLNTISKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHNWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDNRNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSVPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRQFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQIGTTRSQILSNLSDLSLGTSFL 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02720 1448 Pfam CPSF A subunit region 1081 1413 IPR004871 GO:0003676|GO:0005634
Pumo6g02720 1448 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 9 1434 - -
Pumo6g02720 1448 FunFam cleavage and polyadenylation specificity factor subunit 1 970 1355 - -
Pumo6g02720 1448 SUPERFAMILY WD40 repeat-like 775 1286 IPR036322 GO:0005515
Pumo6g02720 1448 Gene3D - 52 445 IPR015943 GO:0005515
Pumo6g02720 1448 Gene3D - 970 1355 IPR015943 GO:0005515
Pumo6g02720 1448 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 128 692 IPR018846 -
Pumo6g02720 1448 FunFam Cleavage and polyadenylation specificity factor subunit 1 51 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02720 Pumo-Chr6 65173364 65198354 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02720 K14401 - gmx:100785543 2769.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02720 6 65173364 65198354 Pumo6g02720 6 65173364 65198354 ECH