Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo6g02618 | ATGGGGAATTCATTTGGGTGTTCTGCTTCCGGCGAGAGGTTGGTGTCGGCGGCGAGAGACGGCGATTTGGTTGAGGCGAAGATGCTTCTAGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTTGGGGGGCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCATTGCTGCTTGAAAATGGAGCTGATGTAAATTCGAGAAATTATTGTGGGCAGACGGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAGACCCTTCTGCTCTTCAGATGCAATGTTATGAAAGCAGATTATCTCAGCGGGAGGACAGCTCTTCACTTTGCAGCCATCAATGGGCATGCAAGATGCATTAGGCTTGTCGTGGCAGATTTTGTTCCAAGTGCTCCTTTTGAAGCTTTACATGCTCGCATGGATGCTGAGGGTGATGGATCAAATGTGAAAAACAAACATGAACAAAGTGCTCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACTACTACTGCTTGATCTTAATGCAAATGTGTCAGCTGTGACATTTCATTATGGTACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGGATAGCTTTGAATTGCAATGGATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCATTATTGACACCTACTTCTGATGCCAGAATATCATCATTCCCTTCTTCAAATTATTTGTCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGAGAGTGTGGACTGCAATCAACTACAACCTCCTCTAACGAAGTTGATGTTTGTGCTGTCTGCCTGGAGAGGCAATGTTCAGTGGCTGCAGAAGGATGTGGACATGAGCTCTGTGTAAGATGTGCACTCTATCTTTGCTCAACAACCAATGTTTCTTCTGAAACGTGTGGACCTCCTGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCTCTTTTGCCAAGTTACCAGGCTCCCAAGCAAAAGAAAATAAATTGCATGTGTCTCTCAGCCTGTGTACCCCATGCATGCTACATCCACGTGACCTAGATCGACAATCTCTTTCTCGTACCCCAGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCGTCGGAGATGCTTTGCCCCGTCACTTGTACTCCATTTCCATCTGTAGCAATTCCTCTATGTACATGCAATGATGGCCCTTGTCCATCATTTGAACCCCGCGAAGCAGAAACACAAGATGAATCGCCTCGTCGCTCACAAGCATCAACGGTGGATCAGGATAAAATGGATGGTCCAAGGCTGGAGAAAACAACATGCTCAGGCATGTTTTGGGGTAGGAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA | 1536 | 0.457 | MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFEALHARMDAEGDGSNVKNKHEQSALSKFVNKTADAGITALHMAALNGYFDCVLLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRIALNCNGWLPLDVARMWGRHWLEPLLTPTSDARISSFPSSNYLSLPLMSVLNIARECGLQSTTTSSNEVDVCAVCLERQCSVAAEGCGHELCVRCALYLCSTTNVSSETCGPPGSIPCPLCRHGIVSFAKLPGSQAKENKLHVSLSLCTPCMLHPRDLDRQSLSRTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREAETQDESPRRSQASTVDQDKMDGPRLEKTTCSGMFWGRRSCSREHQCNSEINA | 511 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo6g02618 | 511 | ProSiteProfiles | Zinc finger RING-type profile. | 318 | 368 | IPR001841 | - | |
| Pumo6g02618 | 511 | Pfam | Ankyrin repeats (3 copies) | 211 | 265 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | Pfam | Ankyrin repeats (3 copies) | 49 | 132 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | ProSitePatterns | Zinc finger RING-type signature. | 333 | 342 | IPR017907 | - | |
| Pumo6g02618 | 511 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 389 | IPR013083 | - | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat profile. | 44 | 76 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat profile. | 176 | 208 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | Gene3D | - | 143 | 269 | IPR036770 | - | |
| Pumo6g02618 | 511 | FunFam | E3 ubiquitin-protein ligase XBAT33 | 6 | 140 | - | - | |
| Pumo6g02618 | 511 | MobiDBLite | consensus disorder prediction | 457 | 484 | - | - | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat profile. | 219 | 251 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat region circular profile. | 111 | 132 | - | - | |
| Pumo6g02618 | 511 | SUPERFAMILY | Ankyrin repeat | 14 | 273 | IPR036770 | - | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat region circular profile. | 176 | 205 | - | - | |
| Pumo6g02618 | 511 | MobiDBLite | consensus disorder prediction | 455 | 485 | - | - | |
| Pumo6g02618 | 511 | PANTHER | ANKYRIN REPEAT-CONTAINING | 171 | 262 | - | - | |
| Pumo6g02618 | 511 | Gene3D | - | 7 | 142 | IPR036770 | - | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat region circular profile. | 219 | 245 | - | - | |
| Pumo6g02618 | 511 | Pfam | Ankyrin repeat | 177 | 207 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | SUPERFAMILY | RING/U-box | 317 | 373 | - | - | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat region circular profile. | 44 | 75 | - | - | |
| Pumo6g02618 | 511 | ProSiteProfiles | Ankyrin repeat profile. | 111 | 132 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | SMART | ANK_2a | 176 | 205 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | SMART | ANK_2a | 219 | 249 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | SMART | ANK_2a | 77 | 106 | IPR002110 | GO:0005515 | |
| Pumo6g02618 | 511 | SMART | ANK_2a | 111 | 142 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo6g02618 | Pumo-Chr6 | 62448388 | 62454927 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo6g02618 | 17 | 272 | Miscellaneous Gene Families | AT5G02620 | 27.273 | 3.50e-14 | 73.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo6g02618 | K19044 | - | gmx:100812809 | 1011.91 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo6g02618 | 6 | 62448388 | 62454927 | Pumo6g02618 | 6 | 62448388 | 62454927 | ECH | |
| Pumo6g02618 | 6 | 62448388 | 62454927 | Pumo3g00912 | 3 | 14178462 | 14183801 | PCT |