Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02568 ATGGGAACATCAGTTCAGGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCCTATTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAACGACCACTTCGACCCTTCCCTCCTTCAACCCCTCGCCAGGGTAGCATCAACCATAGATGCTGTTTTGCTTTCGCATGCGGATACACTTCACCTTGGTGCCCTCCCATATGCCATGAAGCAGCTTGGACTCTCTGCCCCGGTTTATTCAACTGAGCCTGTCTACAGATTGGGCCTTCTCACTATGTATGACCAGTACCTCTCAAGAAAGCAAGTGTCAGAGTTCGATCTGTTCATGCTGGATGATATTGATTCTGCTTTCCAGAGTGTAACGAGGCTAACATATTCTCAGAATCATCATTTCTCAGGCAAGGGAGAAGGAATCGTGATTGCACCTCATGTCGCTGGACATCTTTTGGGAGGTACTGTTTGGAAAATTACAAAGGATGGTGAGGATGTCATTTATGCTGTTGATTTTAATCATAGGAAAGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGCGGCCAGCTGTTCTAATAACTGATGCTTATAATGCTTTGAACAATCAGCCTTACAGACGTCAAAAGGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTAAGGGCAGGTGGCAATGTATTACTACCTGTTGACACTGCGGGACGAGTGTTGGAACTTATTCTGATGTTGGAATCGTATTGGGCTGATGAAAACCTGAACTACCCTATATACTTTCTTACATATGTTGCATCCAGCACAATTGATTATGTAAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTTGAAAAAACTCGTGAAAATATATTTCTTTTGAAGTATGTCACCCTTCTGATTAACAAGACTGAGCTTGACAATGCTCCAGATGGTCCAAAGGTTGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGCTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATGTAAAAAATCTTGTACTTTTTACTGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTTCAAGCTGATCCACCTCCAAAAGCTGTCAAAGTCCTTGTGTCCAAGCGTGTGCCTTTGGTTGGGGAAGAGCTAATTGCCTATGAGGAAGAGCAAAATCGAATAAAAAAAGAAGCTTTAAAAGCCAGTCTTATGAAAGAGGAAGAATTGAAAACATCTCACGGGGCTGATAATAATACTAGTGATCCAATGGTCATTGATTCTGGCAATAATAGTGTACCACCAGAAGTGACTGGTCCACGAGGTGGAGGATTCCGGGACATATTTATTGATGGATTTGTTCCCCCTTCGACGAGTGTTGCTCCAATGTTTCCCTGTTATGAGAATACATCAGAGTGGGATGATTTTGGTGAGGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGGACCAGACAGCAATGCATGGAGGTGATATTAATGGAAAACTAGATGAAGGTGCTGCGAGTTTGATACTTGATACAAAGCCATCGAAAGTCGTATCTGATGAAAGGACTGTGCAAGTCAGGTGTTCATTGGTTTACATGGATTTTGAAGGTCGTTCAGATGGAAGATCCATAAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGGTCAGCTGAAGCTACAGAGCATCTGAAGCAGCACTGCCTGAAGCATGTTTGTCCACATGTTTATGCTCCCCAAATTGAAGAGACAATTGATGTTACTTCTGATTTATGTGCTTATAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTGCTCTTCAAAAAGCTAGGAGATTATGAAATAGCTTGGGTTGATGCTGTAGTAGGGAAGACAGAAAATGACACGCTTTCGCTGCTCCCTGTTTCTGGAGCAGCTCCTCCGCATAAATCTGTTCTTGTTGGTGATTTGAAATTGGCAGATATCAAACAGTTTCTCTCCAGCAAGGGTGTTCAGGTGGAATTTGCTGGCGGGGCTTTGCGTTGTGGTGAATATGTAACTCTTCGGAAAGTTGGGGATGCAAGTCAGAAGGGTGGTGGTTCTGGTGCTCAGCAAATTGTTATTGAGGGTCCTCTGTGTGAAGATTACTATAAAATTCGCGACCATCTCTATTCACAGTTTTATTTGCTTTAG 2217 0.4253 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLLSHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFMLDDIDSAFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRVLELILMLESYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFLLKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQFATLARMLQADPPPKAVKVLVSKRVPLVGEELIAYEEEQNRIKKEALKASLMKEEELKTSHGADNNTSDPMVIDSGNNSVPPEVTGPRGGGFRDIFIDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMDQTAMHGGDINGKLDEGAASLILDTKPSKVVSDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDTLSLLPVSGAAPPHKSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIEGPLCEDYYKIRDHLYSQFYLL 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02568 738 SMART Lactamase_B_5a 17 230 IPR001279 -
Pumo6g02568 738 Pfam Metallo-beta-lactamase superfamily domain 22 188 IPR001279 -
Pumo6g02568 738 MobiDBLite consensus disorder prediction 420 439 - -
Pumo6g02568 738 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Pumo6g02568 738 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 255 - -
Pumo6g02568 738 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 737 IPR027075 GO:0005847|GO:0006378|GO:0006379
Pumo6g02568 738 Pfam Cleavage and polyadenylation factor 2 C-terminal 642 735 IPR025069 -
Pumo6g02568 738 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 532 583 IPR011108 -
Pumo6g02568 738 Gene3D - 7 259 IPR036866 -
Pumo6g02568 738 Pfam Beta-Casp domain 242 365 IPR022712 -
Pumo6g02568 738 SMART Beta_Casp_2 242 365 IPR022712 -
Pumo6g02568 738 MobiDBLite consensus disorder prediction 412 442 - -
Pumo6g02568 738 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 601 IPR036866 -
Pumo6g02568 738 Coils Coil 392 412 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02568 K14402 - gmx:100777002 1432.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02568 6 60124781 60134636 Pumo6g02568 6 60124781 60134636 ECH