Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02557 ATGCGGTGGCCGTGCGGCAGAAAAGGGGGTTCGGGCTTTTCATCTTCTTCCACTGCCGAACAAGTTACTCATGGAATCGATGGCACTGGCCTCACTGCTATTATCACAGGGGCATCCAGTGGTATTGGTGTTGAGACTACCCGTGTTCTTGCTATGCGTGGTGTCCATGTAATTATGGGGGTGAGAAATATGATTGTTGCAAAAGATGTTAAAGAAGCAATACTTAAGGAGATTCCCACAGCTAAAGTTGATGCTATGGAATTAGACCTTAGTTCAATGGCATCTGTACGAAAATTTGCATCAGAGTTCATTTCACATGGTCTTCCATTAAACATTTTGATAAACAATGCAGGAATATTTGGAACCCCTTTCAAGCTATCAGAGGATAATATTGAGCTACAATTTGCCACAAATCACATGGGTCATTTTCTTTTAACAAATTTGTTGTTGGATACTATGAAGAAAACAACACATGACAATAAGAAACAAGGAAGAATTATTAATGTCTCTTCACAAGGTCATCGATTCACCTATCGAGAAGGAATTCTTTTTGATAAAATTAATGATCAATCAAGGTATCAGAAATATCGTGCGTATGGACAATCAAAGCTTGCTAACATTTTACATGCCAATGAACTAGCAAGACGTCTCAAGGAAGATGGGGTAAATATTACTGCCAATTCTCTTCATCCAGGAGCCATTCTCACCAATATTCATCGTTACGACAAAGTATTGACTGCAATTCCAGGTGTAGTTAAGAGGTTGGTGAGTTTTGCACTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGTTATGTAGCATTGCACCCAGAAGTGAGCGAAATTAGTGGTAAGTATCTTGCAGATAATAATATAGCCAAAGCAAGCTCACAAGGAAGGGACATTGATTTGGCTAAGAAACTCTGGGATTTCAGCATGAACTTGATCAAATAG 954 0.3941 MRWPCGRKGGSGFSSSSTAEQVTHGIDGTGLTAIITGASSGIGVETTRVLAMRGVHVIMGVRNMIVAKDVKEAILKEIPTAKVDAMELDLSSMASVRKFASEFISHGLPLNILINNAGIFGTPFKLSEDNIELQFATNHMGHFLLTNLLLDTMKKTTHDNKKQGRIINVSSQGHRFTYREGILFDKINDQSRYQKYRAYGQSKLANILHANELARRLKEDGVNITANSLHPGAILTNIHRYDKVLTAIPGVVKRLVSFALKNVQQGAATTCYVALHPEVSEISGKYLADNNIAKASSQGRDIDLAKKLWDFSMNLIK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02557 317 Gene3D - 24 317 - -
Pumo6g02557 317 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Pumo6g02557 317 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Pumo6g02557 317 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Pumo6g02557 317 PRINTS Glucose/ribitol dehydrogenase family signature 199 218 IPR002347 -
Pumo6g02557 317 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Pumo6g02557 317 PANTHER RETINOL DEHYDROGENASE 11 317 - -
Pumo6g02557 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
Pumo6g02557 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Pumo6g02557 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Pumo6g02557 317 CDD retinol-DH_like_SDR_c_like 30 309 - -
Pumo6g02557 317 Pfam short chain dehydrogenase 32 174 IPR002347 -
Pumo6g02557 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 292 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02557 Pumo-Chr6 59869624 59883679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02557 34 184 Acyl Lipid Metabolism Gene Families AT1G63380 32.716 3.16e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02557 - - gmx:100793843 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02557 6 59869624 59883679 Pumo6g02557 6 59869624 59883679 ECH