Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02483 ATGAAAACCCTTAACAAAGCCTCACTCCTCTTATTCCCTCTCTTGTTCCTTTCCCTATTCAACCATTCCCATGCTGCAGGAATCGCTGTGTACTGGGGCCAAAACGGTGGAGAAGGCACCTTAGCAGATGCTTGCAACACTGGAAACTACCAATATGTGAACATAGCATTCTTGTCCACTTTTGGCAATGGCCAAACTCCTCAACTCAACCTTGCAGGTCATTGTGACCCCACTAACAATGGCTGCACTGGGTTTAGCAGTGACATCAAAACTTGCCAAGACCTTGGCATCAAAGTGTTGCTCTCCCTTGGAGGTGGTACTGCAGGCTACTCCCTCAACTCAGCTGATGAAGCCACACAACTTGCAAACTACCTCTGGGAGAATTTCCTTGGAGGCCAAACAGGATCAGGACCTTTAGGTGATGTTATCTTGGATGGCATTGACTTTGACATTGAGACTGGTGGGAGTGACCATTATGATGACCTTGCCAGGGCACTAAATGGCTTGAGTACTTCACAAAGGAAGGTGTACTTGTCTGCAGCCCCACAGTGCATAATCCCTGATGCTCACTTGGATGCTGCCATCCAAACTGGGCTCTTTGATTATGTGTGGGTTCAGTTCTACAACAACCCTTCATGCCAATACTCCAGTGGGAACACCAATGATTTGATCAATTCATGGAACCAGTGGATCACAGTGCCAGCCACTCAAGTCTTCATGGGGCTTCCTGCATCTGATGCTGCTGCTCCAAGTGGTGGGTTTGTGCCTGCTGATGTGTTAACCTCTCAGGTTCTTCCTGTGATTAAACAGTCTTCAAACTATGGTGGAGTCATGCTCTGGGACAGATTCAATGATGTTCAAACTGGTTACAGTGGTGCTATTATTGGAAGTGTTTAA 897 0.4705 MKTLNKASLLLFPLLFLSLFNHSHAAGIAVYWGQNGGEGTLADACNTGNYQYVNIAFLSTFGNGQTPQLNLAGHCDPTNNGCTGFSSDIKTCQDLGIKVLLSLGGGTAGYSLNSADEATQLANYLWENFLGGQTGSGPLGDVILDGIDFDIETGGSDHYDDLARALNGLSTSQRKVYLSAAPQCIIPDAHLDAAIQTGLFDYVWVQFYNNPSCQYSSGNTNDLINSWNQWITVPATQVFMGLPASDAAAPSGGFVPADVLTSQVLPVIKQSSNYGGVMLWDRFNDVQTGYSGAIIGSV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02483 298 Gene3D Glycosidases 26 297 - -
Pumo6g02483 298 Pfam Glycosyl hydrolases family 18 28 285 IPR001223 GO:0005975
Pumo6g02483 298 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 298 IPR001223 GO:0005975
Pumo6g02483 298 FunFam Acidic endochitinase SE2 26 298 - -
Pumo6g02483 298 SUPERFAMILY (Trans)glycosidases 24 294 IPR017853 -
Pumo6g02483 298 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Pumo6g02483 298 PANTHER ENDOCHITINASE 12 294 - -
Pumo6g02483 298 CDD GH18_hevamine_XipI_class_III 26 296 IPR045321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02483 Pumo-Chr6 57017066 57018750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02483 3 298 Glycoside Hydrolase AT5G24090 56.522 3.36e-122 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02483 K01183 - gmx:547454 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02483 6 57017066 57018750 Pumo3g01090 3 17398685 17399686 PCT