Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02401 ATGGCTACAGAGGAAGAGAGTGCAGTGAAGGAGCCTTTGGATCTCATTAGGCTCAGCCTCGACGAGCGTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCATGCTTATGATCAACATCTTAATATGATTCTCGGTGATGTTGAAGAAATCGTTACTACAGTAGAAATTGATGATGAGACATATGAAGAAATTGTGAGGACTACAAAGCGGACAGTTCCTTTCCTGTTTGTTAGGGGAGATGGGGTGATATTGGTTTCCCCACCATTGAGGACTGCATGA 294 0.4422 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02401 97 FunFam U6 snRNA-associated Sm-like protein LSm3 2 94 - -
Pumo6g02401 97 CDD LSm3 11 92 IPR034105 GO:0000398|GO:0003723
Pumo6g02401 97 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 1 96 IPR040002 GO:0003723
Pumo6g02401 97 SMART Sm3 14 92 IPR001163 -
Pumo6g02401 97 SUPERFAMILY Sm-like ribonucleoproteins 11 93 IPR010920 -
Pumo6g02401 97 Gene3D - 2 94 - -
Pumo6g02401 97 Pfam LSM domain 16 92 IPR001163 -
Pumo6g02401 97 ProSiteProfiles Sm domain profile. 11 96 IPR047575 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02401 Pumo-Chr6 48119948 48122428 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02401 K12622 - gmx:100499782 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02401 6 48119948 48122428 Pumo6g02401 6 48119948 48122428 ECH