Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02226 ATGAGAGAAATAATAAGCATTCATATTGGACAAGCTGGAATTCAGGTTGGTAATTCATGTTGGGAGCTATATTGCCTTGAGCATGGCATTCAACCTGATGGAACAATGCCCAGTGATTCCTCAAATGATGCACATGATGCTTTCAACACCTTCTTCAGTGAAATTGGAACTGGCCAATATGTTCCAAGGGCATTGTTTGTTGATCTGGAGCCTAGTGTAATTGATGAAGTAAGATGTGGTCCTTACAAACAACTCTTCCATCCTGAGCAATTAATGTCTGGCAAGGAAGATGCTGCTAATAACTTTGCAAGGGGACATTACACAGTTGGAAAAGAAATTGAAGAGCTGTGCCTTGACCGTATCAGAAAATTAGCTGACAATTGCACTGGCTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGCTCTGGCTTGGGATCATTGCTTTTGGAACGTTTGTCTGTAGATTATGGGAAGAAGTCAAAACTTGGCTTCATCATTTATCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAACCTTACAATACTGTTCTCTCCAATCACTCTCTTATTGAGCACAGTGATGTAGTTGTGCTCTTGGACAATGAAGCAATATATGACATCTGCAGAAGATCACTAGACATAGAAAGGCCAACTTACACCAACTTGAACCGCTTGATATCTCAAATCATCTCTTCCTTGACAACTTCCTTGAGATTTGATGGTGCAATCAATGTGGACATTTCTGAGTTCCAGACCAACCTCGTGCCGTATCCGCGCATCCATTTCATGCTCTCATCTTATGCCCCTGTGATATCTGCTGCAAAGGCCTACCACGAGCAGCTGTCAGTGCCTGAGATCACCAGAGCTGTGTTTGAGCCATCAAGCATGATGGTCAAGTGTGATCCAAGACATGGCAAGTACATGGCATGCTGCCTCATGTATCGCGGGGATGTTGTGCCAAAAGATGTAAACCTTGCTGTCTCAAATATCAAGACAAAGAGACAAGTTCAGTTTGTTGATTGGTGCCCTACTGGCTTCAAGTGTGGCATCAACTACCAGGCTCCAACAGTGGTACCAGAAGGTGATCTTGCCAAGGTGGAGAGAGCAGTTTGTATGATAAGTAACAACACAGCAGTGGCTGAGGTTTTCTCTCGCATTGACCACAAATTTGACCTCATGTTTGCCAAAAGGGCCTTTGTGCACTGGTATGTGAGTGAAGGCATGGAAGAAGGTGAATTCTCAGAGGCCAGGGAGGATCTTGCTGCCCTTGAAAAGGACTATGATGAAGTTGGGGATGAAGGTGTAGATGAAGATGATGTTTAA 1335 0.4397 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSSNDAHDAFNTFFSEIGTGQYVPRALFVDLEPSVIDEVRCGPYKQLFHPEQLMSGKEDAANNFARGHYTVGKEIEELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFIIYPSPQVSTAVVEPYNTVLSNHSLIEHSDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITRAVFEPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNLAVSNIKTKRQVQFVDWCPTGFKCGINYQAPTVVPEGDLAKVERAVCMISNNTAVAEVFSRIDHKFDLMFAKRAFVHWYVSEGMEEGEFSEAREDLAALEKDYDEVGDEGVDEDDV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02226 444 FunFam Tubulin alpha chain 1 267 - -
Pumo6g02226 444 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Pumo6g02226 444 Gene3D Helix hairpin bin 383 435 IPR023123 -
Pumo6g02226 444 PRINTS Tubulin signature 152 173 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 379 407 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 107 131 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 177 190 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 191 211 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 94 105 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 52 71 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Tubulin signature 133 151 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 SMART Tubulin_4 48 245 IPR003008 GO:0005525
Pumo6g02226 444 Pfam Tubulin C-terminal domain 262 391 IPR018316 -
Pumo6g02226 444 SMART Tubulin_C_4 247 392 IPR018316 -
Pumo6g02226 444 PRINTS Alpha-tubulin signature 359 378 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 119 127 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 384 400 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 273 288 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 421 437 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 44 57 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 87 100 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 160 171 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 147 159 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 320 341 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 213 225 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 PRINTS Alpha-tubulin signature 346 359 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Pumo6g02226 444 Gene3D Tubulin/FtsZ, GTPase domain 1 267 IPR036525 -
Pumo6g02226 444 CDD alpha_tubulin 2 434 - -
Pumo6g02226 444 Pfam Tubulin/FtsZ family, GTPase domain 3 212 IPR003008 GO:0005525
Pumo6g02226 444 FunFam Tubulin alpha chain 268 382 - -
Pumo6g02226 444 Coils Coil 417 437 - -
Pumo6g02226 444 PANTHER TUBULIN 2 435 IPR000217 GO:0005874|GO:0007017
Pumo6g02226 444 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 141 147 IPR017975 GO:0005525|GO:0005874|GO:0007017
Pumo6g02226 444 Gene3D - 268 382 IPR037103 -
Pumo6g02226 444 FunFam Tubulin alpha chain 383 435 - -
Pumo6g02226 444 SUPERFAMILY Tubulin C-terminal domain-like 245 436 IPR008280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02226 Pumo-Chr6 41720797 41724949 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02226 K07374 - gmx:100780531 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02003 5 55695321 55698763 Pumo6g02226 6 41720797 41724949 PCT