Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01736 ATGGATTATCAGTACATTCTAGGAGGGATCATGGCTTGTAGTTTTGCATTTTTGTATTTTGTGTACAGTTTTGGAGCAAAGAAGATGGCAGATTCAAGTTCAATACATGTAAAAGGTAATGAGGGTGCAAAGACATCATCAGATAATGGAATATGGTCACATGAGGATGCAGGAAGTGCTGACATCATCATTGTGGGTGCTGGGGTTGCTGGTGCAGCTCTTGCTTACACACTTGGAAAGGATGGACGACGAGTACATGTGATTGAAAGGGATTTGAGTGAACCTGACAGGATCGTGGGTGAATTGCTACAACCTGGGGGGTATCTGAAGTTAATTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAGCAAGTCTTTGGCTATGCTCTGTATAAGGATGGCAAAAATACCAAGCTCTCTTATCCCTTGGAAAACTTTAGCTCTGATGTTTCTGGGAGAAGTTTTCACAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCAACTCTTCCAAATGTAAAATTAGAACAAGGAACTGTCACATCTCTACTTGAAGAAAAAGGAACCATCGCTGGGGTGCACTACAAAACCAAAAGTGGACAAGAGTTCACAGCAAAGGCTCCCCTCACCATAGTATGTGATGGTTGTTTTTCCAATTTGAGGCGTTCTCTTTGCAATCCTAAGGTTGAAGTACCCTCTCATTTTGTTGGTCTGGTCTTGGAGAATTGTAATCTTCCATATGCAAATCATGGACATGTCATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAATTACCTTCCCTTGGTAGTGGTGAAATGGCCCGCTATTTGAAAACTGTGGTAGCTCCTCAGGTTCCTCCAGAGCTGTATGATTCTTTTATTGCAGCTGTTGACAAAGGAAGCATAAGAACCATGCCAAATAGAAGCATGCCTGCCTCACCTTATCCCACACCAGGTGCCCTTCTAATGGGAGATGCCTTCAATATGCGTCACCCTTTAACTGGAGGAGGAATGACTGTGGCTTTATCTGACATTGTTGTGCTAAGGGATCTACTTAAACCCCTTCATAATCTGCATGATGCTTCTGCTCTTTGCAGATACCTTGAATCATTCTACACCCTACGCAAGCCAGTGGCATCTACAATAAACACACTAGCTGGGGCATTGTACAAAGTGTTCTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCGTGTTTCGATTACTTGAGCCTTGGAGGTGCCTTCTCAGATGGACCAATAGCTCTACTCTCTGGTCTGAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTCGCGGTGGCTATATACGGTGTTGGCCGCCTGCTCATACCATTTCCTTCTCCAAAACGGATGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGCATCATTTTCCCCATTATTAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCAGTAACTGTGCCAGCATATTACAGAACCCCTCCTGTCCATTGA 1575 0.4406 MDYQYILGGIMACSFAFLYFVYSFGAKKMADSSSIHVKGNEGAKTSSDNGIWSHEDAGSADIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDGKNTKLSYPLENFSSDVSGRSFHNGRFIQRMREKASTLPNVKLEQGTVTSLLEEKGTIAGVHYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGSGEMARYLKTVVAPQVPPELYDSFIAAVDKGSIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLHNLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGAFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPVTVPAYYRTPPVH 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01736 524 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016020|GO:0050660
Pumo6g01736 524 SUPERFAMILY FAD/NAD(P)-binding domain 60 434 IPR036188 -
Pumo6g01736 524 PANTHER SQUALENE MONOOXYGENASE 20 522 IPR040125 GO:0004506|GO:0016126
Pumo6g01736 524 FunFam Squalene monooxygenase 2 54 434 - -
Pumo6g01736 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Pumo6g01736 524 Gene3D - 54 434 IPR036188 -
Pumo6g01736 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Pumo6g01736 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Pumo6g01736 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Pumo6g01736 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01736 Pumo-Chr6 26165637 26169378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01736 43 522 Miscellaneous Gene Families AT1G58440 79.167 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01736 K00511 - gmx:100800329 984.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01736 6 26165637 26169378 Pumo6g01736 6 26165637 26169378 ECH