Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01656 ATGGATGAAGAGTACGATGTAATTGTCTTGGGCACAGGTCTCAAGGAATGCATCCTCAGTGGCCTTCTCTCAGTTGATGGCCTCAAGGTGTTGCACATGGATAGAAATGACTACTATGGAGGGGCTTCTACATCTCTCAATCTTACACAGCTGTGGAAGCGATTTAGGGGAGATGACAAGCCGTCAGAGGACTTGGGCTCCAGCAGAGAATACAATGTTGATATGATACCTAAGTTTATGATGGCCAATGGAGCTTTGGTCCGTGTTCTCATTCACACAGATGTTACAAAGTATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAATAAGGGAAAGATATACAAAGTCCCAGCAACAGATGTTGAAGCACTGAAGTCACCATTAATGGGTCTGTTTGAGAAGCGCCGCGCTCGGAAGTTCTTTATTTATGTCCAAGATTATGAAGCAAGTGATCCCAAATCTCACGAAGGACTAGATTTGAACCAAGTTACAGCAAGGCAGCTGATATCGAAATATGGATTGGAAGATGATACAGTTGACTTTATTGGTCATGCCTTGGCACTTCATCGTGATGATAGTTACTTGGATGAGCCAGCCAAGGATTTTGTAGAGAGAGTTAAGGTTTATGCAGAGTCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGGTTCTCTATATCTGTTTCCCTTTTAAACTTAGTAAACTTCAGGAACTAACTTTGGTTTCTTTTATTTCCTTTAAGGCATTTGCACGTCTGAGTGCTGTGTATGGTGGAACTTACATGCTGAACAAGCCAGAATGCAAGGTAGAATTTGACGAAAATGGGAAAGCCATCGGTGTGACTTCAGAAGGAGAAACAGCCAAATGCAAGAAGGTTGTGTGTGATCCATCATATCTGTCTGATAAGGTTCAGAAGGTTGGAAAGGTTGCTCGTGCAATATGTATTATGAGTCATCCTATTCCAGACACCAATAACTCTCACTCAGCACAAGTCATTCTGCCACAGAAGCAGCTTGGTCGCAAGTCAGATATGTATCTCTTCTGCTGCTCTTATGCTCACAATGTAGCAGCCAAAGGAAAATATATTGCTTTTGTTACAACAGAAGCAGAGACTGACGAACCTGAGGTGGAATTGAAGCCTGGTATTGACCTTCTTGGATCTGTAGATGAGATATTCTATGACATTTATGACAGGTTTGAACCCTGCAATGATCATGAAGCTGATGGTTGCTTCATCTCAACAAGCTATGATGCTACCACACACTTTGAAACCACAGTAAAAGATGTGGTTGAGCTGTACAGTAAGATCACTGGAAAGGTTCTTGATCTTTCTGTGGACTTGAGTGCTGCAAGTGCTGCAACTGAAGAATGA 1413 0.4232 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGASTSLNLTQLWKRFRGDDKPSEDLGSSREYNVDMIPKFMMANGALVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEASDPKSHEGLDLNQVTARQLISKYGLEDDTVDFIGHALALHRDDSYLDEPAKDFVERVKVYAESLARFQGGSPYIYPLYGLGELPQVLYICFPFKLSKLQELTLVSFISFKAFARLSAVYGGTYMLNKPECKVEFDENGKAIGVTSEGETAKCKKVVCDPSYLSDKVQKVGKVARAICIMSHPIPDTNNSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAAKGKYIAFVTTEAETDEPEVELKPGIDLLGSVDEIFYDIYDRFEPCNDHEADGCFISTSYDATTHFETTVKDVVELYSKITGKVLDLSVDLSAASAATEE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01656 470 Gene3D - 2 237 IPR036188 -
Pumo6g01656 470 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 237 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 322 412 - -
Pumo6g01656 470 Pfam GDP dissociation inhibitor 261 458 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 Pfam GDP dissociation inhibitor 1 237 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 118 223 - -
Pumo6g01656 470 SUPERFAMILY FAD/NAD(P)-binding domain 415 458 IPR036188 -
Pumo6g01656 470 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 322 412 - -
Pumo6g01656 470 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 57 117 - -
Pumo6g01656 470 Gene3D - 261 454 IPR036188 -
Pumo6g01656 470 PRINTS Rab GDI protein signature 305 319 IPR000806 GO:0005093|GO:0015031
Pumo6g01656 470 PRINTS Rab GDI protein signature 16 28 IPR000806 GO:0005093|GO:0015031
Pumo6g01656 470 PRINTS Rab GDI protein signature 406 425 IPR000806 GO:0005093|GO:0015031
Pumo6g01656 470 PRINTS Rab GDI protein signature 373 391 IPR000806 GO:0005093|GO:0015031
Pumo6g01656 470 PRINTS Rab GDI protein signature 348 364 IPR000806 GO:0005093|GO:0015031
Pumo6g01656 470 PRINTS Rab GDI protein signature 427 447 IPR000806 GO:0005093|GO:0015031
Pumo6g01656 470 PRINTS Rab GDI protein signature 75 88 IPR000806 GO:0005093|GO:0015031
Pumo6g01656 470 SUPERFAMILY FAD/NAD(P)-binding domain 1 379 IPR036188 -
Pumo6g01656 470 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 118 223 - -
Pumo6g01656 470 PRINTS Rab GDI/REP protein family signature 86 102 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 PRINTS Rab GDI/REP protein family signature 135 150 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 PRINTS Rab GDI/REP protein family signature 24 41 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 PRINTS Rab GDI/REP protein family signature 6 24 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 PRINTS Rab GDI/REP protein family signature 69 86 IPR018203 GO:0005092|GO:0007264
Pumo6g01656 470 PRINTS Rab GDI/REP protein family signature 212 229 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01656 Pumo-Chr6 24540887 24548225 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01656 K17255 - gmx:100792036 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01656 6 24540887 24548225 Pumo6g01656 6 24540887 24548225 ECH