Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01622 ATGGAAGCTACATCTAAATGCAGAAGGTACAGAAAGGGTCCCACAAGCACTTCTATGCATGGTTGCTATGCGTCCAAAAATATCTCTAGTTCTCAGCCAAATTATGGAGAAGCAAAAGTTACCTGCGGAGTTTGCAAAGAAGAGTGCCACTGTTTAATGCCCTCAAGAACAACCTTACACCGTTGTTCTGCGTGCCTTAATGCTAGCAATTCAACTTTGGGACCACGTGGTTTAAAGAAAGAATGTGCAATATGCCGTCCAGTGAAGAAAATTGGAGCCAAATTGTTGAAACTTGGTGATCTAGGAAGTTCAAACAAAAATGGAAATTTGCTGAGTGGGTCATTATTATCTCCTTCAATGCCCTCTTCTTCCTCAGCCCTGCCTAGCACTAGCAGATATAATAAACGTGCGGTTCTCTGTGGAGTGACCTACAGAAAAAGGAAATTCAGGCTCAAAGGAACCATTAATGACATTAGGAACATGAAGGAACTGCTGATAAAGAATTTTAAGTTTCCAAAGGAGTGCATACGAGTCCTCACAGAACAAGAGCAAAATGTCAATCTAATACCAACGAAACACAACATATTGGAGTCCTTAAGGTGGCTTGTGAAGGACTGTCAGGCAGGAGATTCATTGCTCTTTTACTTCTCGGGACACGGTTTGCAACAGCCAGATTTCAAGGAAGATGAAATTGATGGGTTTGATGAGACTCTTTGTCCTGTTGATTTTTTGAGGGAAGGAATGATCATTGACAATGAAATAAATTCTACCATAGTTTGGCCACTAAAGGAAGGTGTCACACTTCATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTTTTGTTTGTTTATAAACATGAAAGTGGCATTTGGGAGGATAACAAGCCCCCTTCAAAAGAACCTATCAGAAAACATACAGGTGGTGGATTGGCCATTTGTCTTAGTGCTTGTGAAGATGGTCAGACAGCTGCTGATAGCTCAGTTTTTGGTGGAAAGGGAATGAATGGTGTTCTGACTTATCTTTTCACAAAAACAATCAGAGAATACCCTGGAATAACTTATGGGGGTCTCCTAGATAAGATGCATGACGAAATTAAAAAGATTAACCAAAGCAGATGCAATAACCGCATATTGCAACATATCTTCAATCGTAAAATTGCACAGGATCCTCTTTTATCATCATCAGCGAAATTTGATGTTTCTACGACAATGTTCACATTGTGA 1233 0.4006 MEATSKCRRYRKGPTSTSMHGCYASKNISSSQPNYGEAKVTCGVCKEECHCLMPSRTTLHRCSACLNASNSTLGPRGLKKECAICRPVKKIGAKLLKLGDLGSSNKNGNLLSGSLLSPSMPSSSSALPSTSRYNKRAVLCGVTYRKRKFRLKGTINDIRNMKELLIKNFKFPKECIRVLTEQEQNVNLIPTKHNILESLRWLVKDCQAGDSLLFYFSGHGLQQPDFKEDEIDGFDETLCPVDFLREGMIIDNEINSTIVWPLKEGVTLHAIVDACHSGTILDLLFVYKHESGIWEDNKPPSKEPIRKHTGGGLAICLSACEDGQTAADSSVFGGKGMNGVLTYLFTKTIREYPGITYGGLLDKMHDEIKKINQSRCNNRILQHIFNRKIAQDPLLSSSAKFDVSTTMFTL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01622 410 FunFam Type I metacaspase 84 410 - -
Pumo6g01622 410 Pfam Caspase domain 135 397 IPR011600 GO:0004197|GO:0006508
Pumo6g01622 410 Gene3D - 112 410 - -
Pumo6g01622 410 PANTHER METACASPASE-4 133 404 - -
Pumo6g01622 410 SUPERFAMILY Caspase-like 138 368 IPR029030 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01622 Pumo-Chr6 23636901 23639997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01622 K22684 - gmx:100796640 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01622 6 23636901 23639997 Pumo6g01622 6 23636901 23639997 ECH
Pumo6g01622 6 23636901 23639997 Pumo2g01085 2 15927170 15929342 PCT